NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM488481 Query DataSets for GSM488481
Status Public on Sep 15, 2011
Title CHOP1052
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 4
risk: 2
mycn: 2
age: 126
shimada: 1
sex: 2
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.0720139
rs10000010-124_B_F_IFB1137743663:0 0.2897368
rs10000023-124_B_F_IFB1136477253:0 -0.009664847
rs10000030-124_B_R_IFB1137703207:0 0.1196327
rs10000041-124_T_R_IFB1138580443:0 -0.2993479
rs1000007-124_T_F_IFB1135763903:0 0.01457557
rs10000081-124_B_F_IFB1142608068:0 -0.507301
rs10000092-124_T_R_IFB1136459723:0 -0.3671879
rs10000121-124_B_R_IFB1136471760:0 -0.1115162
rs10000134-124_T_R_IFB1140474257:0 0.1272616
rs1000014-124_B_R_IFB1136184019:0 -0.4115986
rs10000141-124_T_F_IFB1137734411:0 0.03025899
rs10000143-124_T_R_IFB1141671490:0 0.1305361
rs1000016-124_B_R_IFB1135100999:0 -0.06413322
rs10000160-124_T_F_IFB1139532456:0 -0.04045921
rs10000169-124_T_R_IFB1135612081:0 0.04473753
rs10000185-124_B_F_IFB1138742483:0 -0.2571235
rs10000201-124_T_F_IFB1139525076:0 0.4069998
rs1000022-124_B_F_IFB1135126284:0 0.2675589
rs10000226-124_B_F_IFB1141217968:0 0.1639268

Total number of rows: 555175

Table truncated, full table size 24318 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap