NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM488401 Query DataSets for GSM488401
Status Public on Sep 15, 2011
Title CHOP0341
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 1
age: 1968
shimada: 2
sex: 1
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.0319967
rs10000010-124_B_F_IFB1137743663:0 0.1974457
rs10000023-124_B_F_IFB1136477253:0 0.0486811
rs10000030-124_B_R_IFB1137703207:0 0.1150496
rs10000041-124_T_R_IFB1138580443:0 -0.1200454
rs1000007-124_T_F_IFB1135763903:0 -0.2289389
rs10000081-124_B_F_IFB1142608068:0 -0.1045549
rs10000092-124_T_R_IFB1136459723:0 0.3325343
rs10000121-124_B_R_IFB1136471760:0 -0.1851083
rs10000134-124_T_R_IFB1140474257:0 0.1279341
rs1000014-124_B_R_IFB1136184019:0 -0.2257854
rs10000141-124_T_F_IFB1137734411:0 0.1876616
rs10000143-124_T_R_IFB1141671490:0 0.1922943
rs1000016-124_B_R_IFB1135100999:0 -0.1547691
rs10000160-124_T_F_IFB1139532456:0 0.1198637
rs10000169-124_T_R_IFB1135612081:0 0.0690281
rs10000185-124_B_F_IFB1138742483:0 0.1217635
rs10000201-124_T_F_IFB1139525076:0 0.4011605
rs1000022-124_B_F_IFB1135126284:0 0.2464889
rs10000226-124_B_F_IFB1141217968:0 0.2195269

Total number of rows: 555175

Table truncated, full table size 24128 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap