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Sample GSM488541 Query DataSets for GSM488541
Status Public on Sep 15, 2011
Title CHOP1218
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 2
age: 1133
shimada: 2
sex: 2
ploidy: NA
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.2470612
rs10000010-124_B_F_IFB1137743663:0 -0.02059978
rs10000023-124_B_F_IFB1136477253:0 0.08746286
rs10000030-124_B_R_IFB1137703207:0 -0.1852751
rs10000041-124_T_R_IFB1138580443:0 -0.0428234
rs1000007-124_T_F_IFB1135763903:0 0.07732397
rs10000081-124_B_F_IFB1142608068:0 -0.4022959
rs10000092-124_T_R_IFB1136459723:0 -0.1587565
rs10000121-124_B_R_IFB1136471760:0 -0.568071
rs10000134-124_T_R_IFB1140474257:0 0.02283216
rs1000014-124_B_R_IFB1136184019:0 -0.03377419
rs10000141-124_T_F_IFB1137734411:0 0.01479432
rs10000143-124_T_R_IFB1141671490:0 0.09763948
rs1000016-124_B_R_IFB1135100999:0 -0.2565165
rs10000160-124_T_F_IFB1139532456:0 -0.2192051
rs10000169-124_T_R_IFB1135612081:0 0.03784337
rs10000185-124_B_F_IFB1138742483:0 0.0367157
rs10000201-124_T_F_IFB1139525076:0 0.05788234
rs1000022-124_B_F_IFB1135126284:0 -0.01982159
rs10000226-124_B_F_IFB1141217968:0 -0.08821622

Total number of rows: 555175

Table truncated, full table size 24378 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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