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Sample GSM488380 Query DataSets for GSM488380
Status Public on Sep 15, 2011
Title CHOP0237
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 1
age: 673
shimada: NA
sex: 1
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.0095683
rs10000010-124_B_F_IFB1137743663:0 0.6296823
rs10000023-124_B_F_IFB1136477253:0 -1.085608
rs10000030-124_B_R_IFB1137703207:0 -0.9178994
rs10000041-124_T_R_IFB1138580443:0 -0.7581966
rs1000007-124_T_F_IFB1135763903:0 -0.6047742
rs10000081-124_B_F_IFB1142608068:0 0.0957723
rs10000092-124_T_R_IFB1136459723:0 0.3266869
rs10000121-124_B_R_IFB1136471760:0 -1.3108475
rs10000134-124_T_R_IFB1140474257:0 -0.4673271
rs1000014-124_B_R_IFB1136184019:0 0.0942804
rs10000141-124_T_F_IFB1137734411:0 0.3948179
rs10000143-124_T_R_IFB1141671490:0 -0.3203178
rs1000016-124_B_R_IFB1135100999:0 -0.321672
rs10000160-124_T_F_IFB1139532456:0 -0.6835119
rs10000169-124_T_R_IFB1135612081:0 -0.7212697
rs10000185-124_B_F_IFB1138742483:0 0.0480401
rs10000201-124_T_F_IFB1139525076:0 0.5984675
rs1000022-124_B_F_IFB1135126284:0 -0.0699916
rs10000226-124_B_F_IFB1141217968:0 -0.3230557

Total number of rows: 555175

Table truncated, full table size 24120 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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