NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM488463 Query DataSets for GSM488463
Status Public on Sep 15, 2011
Title CHOP0975
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 4
risk: 2
mycn: 2
age: 1786
shimada: 1
sex: 2
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.001921335
rs10000010-124_B_F_IFB1137743663:0 -0.1885351
rs10000023-124_B_F_IFB1136477253:0 -0.1840059
rs10000030-124_B_R_IFB1137703207:0 -0.7347362
rs10000041-124_T_R_IFB1138580443:0 -0.2597649
rs1000007-124_T_F_IFB1135763903:0 -0.02947715
rs10000081-124_B_F_IFB1142608068:0 -0.4252086
rs10000092-124_T_R_IFB1136459723:0 -0.05003474
rs10000121-124_B_R_IFB1136471760:0 -0.7300322
rs10000134-124_T_R_IFB1140474257:0 -0.004825647
rs1000014-124_B_R_IFB1136184019:0 -0.1567883
rs10000141-124_T_F_IFB1137734411:0 -0.1648974
rs10000143-124_T_R_IFB1141671490:0 -0.09712135
rs1000016-124_B_R_IFB1135100999:0 0.02318204
rs10000160-124_T_F_IFB1139532456:0 -0.2188002
rs10000169-124_T_R_IFB1135612081:0 -0.1002055
rs10000185-124_B_F_IFB1138742483:0 -0.3978941
rs10000201-124_T_F_IFB1139525076:0 0.1601134
rs1000022-124_B_F_IFB1135126284:0 -0.1631173
rs10000226-124_B_F_IFB1141217968:0 -0.07003035

Total number of rows: 555175

Table truncated, full table size 24343 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap