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Sample GSM488525 Query DataSets for GSM488525
Status Public on Sep 15, 2011
Title CHOP1171
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 2
age: 2100
shimada: 2
sex: 1
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.0659167
rs10000010-124_B_F_IFB1137743663:0 0.233481
rs10000023-124_B_F_IFB1136477253:0 -0.083227
rs10000030-124_B_R_IFB1137703207:0 0.0005395
rs10000041-124_T_R_IFB1138580443:0 -0.3239716
rs1000007-124_T_F_IFB1135763903:0 -0.1686344
rs10000081-124_B_F_IFB1142608068:0 -0.3868313
rs10000092-124_T_R_IFB1136459723:0 0.2360951
rs10000121-124_B_R_IFB1136471760:0 -0.4967185
rs10000134-124_T_R_IFB1140474257:0 0.1244129
rs1000014-124_B_R_IFB1136184019:0 -0.231859
rs10000141-124_T_F_IFB1137734411:0 0.2903651
rs10000143-124_T_R_IFB1141671490:0 0.0187379
rs1000016-124_B_R_IFB1135100999:0 -0.3706648
rs10000160-124_T_F_IFB1139532456:0 -0.0706637
rs10000169-124_T_R_IFB1135612081:0 0.2970346
rs10000185-124_B_F_IFB1138742483:0 -0.1998007
rs10000201-124_T_F_IFB1139525076:0 0.4632647
rs1000022-124_B_F_IFB1135126284:0 0.0664578
rs10000226-124_B_F_IFB1141217968:0 0.2119454

Total number of rows: 555175

Table truncated, full table size 24128 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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