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Sample GSM488448 Query DataSets for GSM488448
Status Public on Sep 15, 2011
Title CHOP0519
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 2
age: 497
shimada: NA
sex: 2
ploidy: NA
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.0553184
rs10000010-124_B_F_IFB1137743663:0 -0.0026202
rs10000023-124_B_F_IFB1136477253:0 -0.0033275
rs10000030-124_B_R_IFB1137703207:0 -0.3040982
rs10000041-124_T_R_IFB1138580443:0 -0.0173336
rs1000007-124_T_F_IFB1135763903:0 -0.357572
rs10000081-124_B_F_IFB1142608068:0 -0.4570506
rs10000092-124_T_R_IFB1136459723:0 0.0742555
rs10000121-124_B_R_IFB1136471760:0 -0.3854373
rs10000134-124_T_R_IFB1140474257:0 0.2173937
rs1000014-124_B_R_IFB1136184019:0 -0.0168141
rs10000141-124_T_F_IFB1137734411:0 0.2797942
rs10000143-124_T_R_IFB1141671490:0 0.1059886
rs1000016-124_B_R_IFB1135100999:0 -0.2395188
rs10000160-124_T_F_IFB1139532456:0 -0.2353732
rs10000169-124_T_R_IFB1135612081:0 -0.0368602
rs10000185-124_B_F_IFB1138742483:0 -0.5577835
rs10000201-124_T_F_IFB1139525076:0 0.2151001
rs1000022-124_B_F_IFB1135126284:0 -0.2928267
rs10000226-124_B_F_IFB1141217968:0 0.0248709

Total number of rows: 555175

Table truncated, full table size 24140 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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