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Sample GSM488504 Query DataSets for GSM488504
Status Public on Sep 15, 2011
Title CHOP1114
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 1
age: 1800
shimada: 2
sex: 1
ploidy: NA
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.0116615
rs10000010-124_B_F_IFB1137743663:0 0.3976635
rs10000023-124_B_F_IFB1136477253:0 -0.0809971
rs10000030-124_B_R_IFB1137703207:0 0.0246331
rs10000041-124_T_R_IFB1138580443:0 0.1535721
rs1000007-124_T_F_IFB1135763903:0 -0.2047257
rs10000081-124_B_F_IFB1142608068:0 -0.1645539
rs10000092-124_T_R_IFB1136459723:0 0.1729284
rs10000121-124_B_R_IFB1136471760:0 -0.6801524
rs10000134-124_T_R_IFB1140474257:0 0.223201
rs1000014-124_B_R_IFB1136184019:0 0.083784
rs10000141-124_T_F_IFB1137734411:0 0.1130232
rs10000143-124_T_R_IFB1141671490:0 0.2858512
rs1000016-124_B_R_IFB1135100999:0 -0.1822207
rs10000160-124_T_F_IFB1139532456:0 -0.0586883
rs10000169-124_T_R_IFB1135612081:0 0.0122099
rs10000185-124_B_F_IFB1138742483:0 -0.1270822
rs10000201-124_T_F_IFB1139525076:0 0.3513779
rs1000022-124_B_F_IFB1135126284:0 -0.2403138
rs10000226-124_B_F_IFB1141217968:0 0.1939642

Total number of rows: 555175

Table truncated, full table size 24102 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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