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Sample GSM488523 Query DataSets for GSM488523
Status Public on Sep 15, 2011
Title CHOP1168
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 4
risk: 2
mycn: 2
age: 510
shimada: 1
sex: 2
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.4746627
rs10000010-124_B_F_IFB1137743663:0 -0.2088247
rs10000023-124_B_F_IFB1136477253:0 0.0711998
rs10000030-124_B_R_IFB1137703207:0 -0.9376057
rs10000041-124_T_R_IFB1138580443:0 0.6963471
rs1000007-124_T_F_IFB1135763903:0 0.0160394
rs10000081-124_B_F_IFB1142608068:0 -0.838388
rs10000092-124_T_R_IFB1136459723:0 -0.1136992
rs10000121-124_B_R_IFB1136471760:0 -1.4711883
rs10000134-124_T_R_IFB1140474257:0 0.3445858
rs1000014-124_B_R_IFB1136184019:0 0.1653021
rs10000141-124_T_F_IFB1137734411:0 0.4119679
rs10000143-124_T_R_IFB1141671490:0 -0.4358101
rs1000016-124_B_R_IFB1135100999:0 -1.063792
rs10000160-124_T_F_IFB1139532456:0 0.034901
rs10000169-124_T_R_IFB1135612081:0 0.5462667
rs10000185-124_B_F_IFB1138742483:0 -0.0707166
rs10000201-124_T_F_IFB1139525076:0 0.3626952
rs1000022-124_B_F_IFB1135126284:0 -0.7012258
rs10000226-124_B_F_IFB1141217968:0 -0.5931855

Total number of rows: 555175

Table truncated, full table size 24131 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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