NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM488390 Query DataSets for GSM488390
Status Public on Sep 15, 2011
Title CHOP0292
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 2
age: 1807
shimada: 4
sex: 1
ploidy: NA
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.0697408
rs10000010-124_B_F_IFB1137743663:0 -0.39793
rs10000023-124_B_F_IFB1136477253:0 0.045202
rs10000030-124_B_R_IFB1137703207:0 -0.0692021
rs10000041-124_T_R_IFB1138580443:0 0.003158
rs1000007-124_T_F_IFB1135763903:0 -0.2176823
rs10000081-124_B_F_IFB1142608068:0 -0.7781263
rs10000092-124_T_R_IFB1136459723:0 -0.5263997
rs10000121-124_B_R_IFB1136471760:0 -0.4005678
rs10000134-124_T_R_IFB1140474257:0 -0.0083619
rs1000014-124_B_R_IFB1136184019:0 -0.1266593
rs10000141-124_T_F_IFB1137734411:0 -0.1896639
rs10000143-124_T_R_IFB1141671490:0 0.2104528
rs1000016-124_B_R_IFB1135100999:0 -0.0711851
rs10000160-124_T_F_IFB1139532456:0 -0.227246
rs10000169-124_T_R_IFB1135612081:0 -0.0249139
rs10000185-124_B_F_IFB1138742483:0 -0.7495768
rs10000201-124_T_F_IFB1139525076:0 0.225054
rs1000022-124_B_F_IFB1135126284:0 -0.0104487
rs10000226-124_B_F_IFB1141217968:0 0.11989

Total number of rows: 555175

Table truncated, full table size 24135 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap