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Sample GSM488416 Query DataSets for GSM488416
Status Public on Sep 15, 2011
Title CHOP0421
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 2
age: 3252
shimada: 2
sex: 1
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.047598
rs10000010-124_B_F_IFB1137743663:0 0.0877812
rs10000023-124_B_F_IFB1136477253:0 -0.0102021
rs10000030-124_B_R_IFB1137703207:0 -0.2542942
rs10000041-124_T_R_IFB1138580443:0 -0.5701932
rs1000007-124_T_F_IFB1135763903:0 -0.0840042
rs10000081-124_B_F_IFB1142608068:0 -0.3394231
rs10000092-124_T_R_IFB1136459723:0 0.4339358
rs10000121-124_B_R_IFB1136471760:0 -0.3196032
rs10000134-124_T_R_IFB1140474257:0 -0.1086341
rs1000014-124_B_R_IFB1136184019:0 -0.2183968
rs10000141-124_T_F_IFB1137734411:0 -0.3157927
rs10000143-124_T_R_IFB1141671490:0 -0.1655154
rs1000016-124_B_R_IFB1135100999:0 -0.0253128
rs10000160-124_T_F_IFB1139532456:0 -0.330346
rs10000169-124_T_R_IFB1135612081:0 -0.3738699
rs10000185-124_B_F_IFB1138742483:0 -0.4487882
rs10000201-124_T_F_IFB1139525076:0 0.1160114
rs1000022-124_B_F_IFB1135126284:0 -0.0549765
rs10000226-124_B_F_IFB1141217968:0 -0.0924503

Total number of rows: 555175

Table truncated, full table size 24128 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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