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Sample GSM488498 Query DataSets for GSM488498
Status Public on Sep 15, 2011
Title CHOP1097
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 2
age: 512
shimada: 1
sex: 1
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.1047049
rs10000010-124_B_F_IFB1137743663:0 0.1506511
rs10000023-124_B_F_IFB1136477253:0 0.09459856
rs10000030-124_B_R_IFB1137703207:0 -0.1932257
rs10000041-124_T_R_IFB1138580443:0 -0.4457077
rs1000007-124_T_F_IFB1135763903:0 -0.1554249
rs10000081-124_B_F_IFB1142608068:0 -0.380803
rs10000092-124_T_R_IFB1136459723:0 0.1099276
rs10000121-124_B_R_IFB1136471760:0 -0.4030325
rs10000134-124_T_R_IFB1140474257:0 0.04635375
rs1000014-124_B_R_IFB1136184019:0 -0.2366424
rs10000141-124_T_F_IFB1137734411:0 0.03081879
rs10000143-124_T_R_IFB1141671490:0 0.09843303
rs1000016-124_B_R_IFB1135100999:0 -0.2224768
rs10000160-124_T_F_IFB1139532456:0 -0.1424869
rs10000169-124_T_R_IFB1135612081:0 0.20721
rs10000185-124_B_F_IFB1138742483:0 -0.2877395
rs10000201-124_T_F_IFB1139525076:0 0.336073
rs1000022-124_B_F_IFB1135126284:0 0.02195112
rs10000226-124_B_F_IFB1141217968:0 0.2131847

Total number of rows: 555175

Table truncated, full table size 24361 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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