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Sample GSM488393 Query DataSets for GSM488393
Status Public on Sep 15, 2011
Title CHOP0307
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 2
risk: 1
mycn: 2
age: 297
shimada: 1
sex: 1
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.0427524
rs10000010-124_B_F_IFB1137743663:0 -0.4986617
rs10000023-124_B_F_IFB1136477253:0 0.0518295
rs10000030-124_B_R_IFB1137703207:0 -0.3755625
rs10000041-124_T_R_IFB1138580443:0 0.3161057
rs1000007-124_T_F_IFB1135763903:0 -0.1521304
rs10000081-124_B_F_IFB1142608068:0 -0.4543714
rs10000092-124_T_R_IFB1136459723:0 -0.0934234
rs10000121-124_B_R_IFB1136471760:0 -0.7453354
rs10000134-124_T_R_IFB1140474257:0 0.091502
rs1000014-124_B_R_IFB1136184019:0 0.1103442
rs10000141-124_T_F_IFB1137734411:0 0.0196965
rs10000143-124_T_R_IFB1141671490:0 -0.0776426
rs1000016-124_B_R_IFB1135100999:0 -0.2396852
rs10000160-124_T_F_IFB1139532456:0 -0.1595489
rs10000169-124_T_R_IFB1135612081:0 -0.0261446
rs10000185-124_B_F_IFB1138742483:0 -0.2571631
rs10000201-124_T_F_IFB1139525076:0 -0.0093612
rs1000022-124_B_F_IFB1135126284:0 0.1383438
rs10000226-124_B_F_IFB1141217968:0 -0.0901791

Total number of rows: 555175

Table truncated, full table size 24115 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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