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Sample GSM488529 Query DataSets for GSM488529
Status Public on Sep 15, 2011
Title CHOP1175
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 2
age: 1963
shimada: 2
sex: 2
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.035792
rs10000010-124_B_F_IFB1137743663:0 -0.2770274
rs10000023-124_B_F_IFB1136477253:0 0.0405598
rs10000030-124_B_R_IFB1137703207:0 0.2063887
rs10000041-124_T_R_IFB1138580443:0 -0.058573
rs1000007-124_T_F_IFB1135763903:0 -0.0703798
rs10000081-124_B_F_IFB1142608068:0 -0.9183469
rs10000092-124_T_R_IFB1136459723:0 -0.2565499
rs10000121-124_B_R_IFB1136471760:0 -0.107901
rs10000134-124_T_R_IFB1140474257:0 0.0948065
rs1000014-124_B_R_IFB1136184019:0 -0.1677684
rs10000141-124_T_F_IFB1137734411:0 -0.3321713
rs10000143-124_T_R_IFB1141671490:0 0.090134
rs1000016-124_B_R_IFB1135100999:0 -0.0542853
rs10000160-124_T_F_IFB1139532456:0 -0.2003697
rs10000169-124_T_R_IFB1135612081:0 0.1898929
rs10000185-124_B_F_IFB1138742483:0 -0.5647549
rs10000201-124_T_F_IFB1139525076:0 -0.0505875
rs1000022-124_B_F_IFB1135126284:0 -0.4825027
rs10000226-124_B_F_IFB1141217968:0 0.2142508

Total number of rows: 555175

Table truncated, full table size 24130 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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