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Sample GSM488506 Query DataSets for GSM488506
Status Public on Sep 15, 2011
Title CHOP1119
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 2
age: 1238
shimada: 2
sex: 2
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.1177889
rs10000010-124_B_F_IFB1137743663:0 -1.2808856
rs10000023-124_B_F_IFB1136477253:0 0.3166322
rs10000030-124_B_R_IFB1137703207:0 -0.2116902
rs10000041-124_T_R_IFB1138580443:0 0.200803
rs1000007-124_T_F_IFB1135763903:0 -0.2319135
rs10000081-124_B_F_IFB1142608068:0 -0.9189048
rs10000092-124_T_R_IFB1136459723:0 -0.4651565
rs10000121-124_B_R_IFB1136471760:0 -0.2984901
rs10000134-124_T_R_IFB1140474257:0 0.3359742
rs1000014-124_B_R_IFB1136184019:0 0.0824633
rs10000141-124_T_F_IFB1137734411:0 -0.6065879
rs10000143-124_T_R_IFB1141671490:0 0.2835982
rs1000016-124_B_R_IFB1135100999:0 -0.2686157
rs10000160-124_T_F_IFB1139532456:0 0.0807355
rs10000169-124_T_R_IFB1135612081:0 0.1517943
rs10000185-124_B_F_IFB1138742483:0 -0.7885226
rs10000201-124_T_F_IFB1139525076:0 -0.4628439
rs1000022-124_B_F_IFB1135126284:0 0.1756222
rs10000226-124_B_F_IFB1141217968:0 0.2102328

Total number of rows: 555175

Table truncated, full table size 24167 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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