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Sample GSM488438 Query DataSets for GSM488438
Status Public on Sep 15, 2011
Title CHOP0495
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 2
age: 804
shimada: 2
sex: 1
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.1897279
rs10000010-124_B_F_IFB1137743663:0 -0.02021782
rs10000023-124_B_F_IFB1136477253:0 0.1214478
rs10000030-124_B_R_IFB1137703207:0 -0.2356255
rs10000041-124_T_R_IFB1138580443:0 0.05024368
rs1000007-124_T_F_IFB1135763903:0 -0.1960283
rs10000081-124_B_F_IFB1142608068:0 -0.5216801
rs10000092-124_T_R_IFB1136459723:0 0.05449271
rs10000121-124_B_R_IFB1136471760:0 -0.1800854
rs10000134-124_T_R_IFB1140474257:0 -0.04130044
rs1000014-124_B_R_IFB1136184019:0 -0.1016588
rs10000141-124_T_F_IFB1137734411:0 -0.02400765
rs10000143-124_T_R_IFB1141671490:0 0.1020447
rs1000016-124_B_R_IFB1135100999:0 -0.1302374
rs10000160-124_T_F_IFB1139532456:0 -0.2474266
rs10000169-124_T_R_IFB1135612081:0 -0.03152934
rs10000185-124_B_F_IFB1138742483:0 -0.1374851
rs10000201-124_T_F_IFB1139525076:0 0.1574984
rs1000022-124_B_F_IFB1135126284:0 -0.03021556
rs10000226-124_B_F_IFB1141217968:0 0.1066094

Total number of rows: 555175

Table truncated, full table size 24367 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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