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Sample GSM488513 Query DataSets for GSM488513
Status Public on Sep 15, 2011
Title CHOP1136
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 4
risk: 3
mycn: 2
age: 2512
shimada: 2
sex: 2
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.1271671
rs10000010-124_B_F_IFB1137743663:0 -0.0044039
rs10000023-124_B_F_IFB1136477253:0 0.0133266
rs10000030-124_B_R_IFB1137703207:0 -0.5457226
rs10000041-124_T_R_IFB1138580443:0 0.0117601
rs1000007-124_T_F_IFB1135763903:0 -0.014657
rs10000081-124_B_F_IFB1142608068:0 -0.3632522
rs10000092-124_T_R_IFB1136459723:0 -0.2948304
rs10000121-124_B_R_IFB1136471760:0 -0.7003475
rs10000134-124_T_R_IFB1140474257:0 -0.1963579
rs1000014-124_B_R_IFB1136184019:0 0.0642981
rs10000141-124_T_F_IFB1137734411:0 0.1200051
rs10000143-124_T_R_IFB1141671490:0 0.0823032
rs1000016-124_B_R_IFB1135100999:0 -0.1360177
rs10000160-124_T_F_IFB1139532456:0 0.2208189
rs10000169-124_T_R_IFB1135612081:0 -0.0914022
rs10000185-124_B_F_IFB1138742483:0 -0.7319481
rs10000201-124_T_F_IFB1139525076:0 0.2424906
rs1000022-124_B_F_IFB1135126284:0 0.1668884
rs10000226-124_B_F_IFB1141217968:0 -0.019298

Total number of rows: 555175

Table truncated, full table size 24173 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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