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Sample GSM488454 Query DataSets for GSM488454
Status Public on Sep 15, 2011
Title CHOP0535
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 4
risk: 2
mycn: 2
age: 134
shimada: 2
sex: 1
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.3286369
rs10000010-124_B_F_IFB1137743663:0 -0.0222397
rs10000023-124_B_F_IFB1136477253:0 -0.0755029
rs10000030-124_B_R_IFB1137703207:0 -0.2610341
rs10000041-124_T_R_IFB1138580443:0 -0.1732253
rs1000007-124_T_F_IFB1135763903:0 0.0548978
rs10000081-124_B_F_IFB1142608068:0 -0.4230596
rs10000092-124_T_R_IFB1136459723:0 -0.0579348
rs10000121-124_B_R_IFB1136471760:0 -0.5540774
rs10000134-124_T_R_IFB1140474257:0 -0.0051754
rs1000014-124_B_R_IFB1136184019:0 -0.2159151
rs10000141-124_T_F_IFB1137734411:0 -0.2615027
rs10000143-124_T_R_IFB1141671490:0 0.0111843
rs1000016-124_B_R_IFB1135100999:0 0.0505708
rs10000160-124_T_F_IFB1139532456:0 -0.1469075
rs10000169-124_T_R_IFB1135612081:0 -0.1846609
rs10000185-124_B_F_IFB1138742483:0 -0.121031
rs10000201-124_T_F_IFB1139525076:0 -0.0381553
rs1000022-124_B_F_IFB1135126284:0 -0.1142238
rs10000226-124_B_F_IFB1141217968:0 -0.0931921

Total number of rows: 555175

Table truncated, full table size 24153 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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