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Sample GSM488520 Query DataSets for GSM488520
Status Public on Sep 15, 2011
Title CHOP1163
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 2
mycn: 2
age: 362
shimada: 1
sex: 2
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.09813761
rs10000010-124_B_F_IFB1137743663:0 -0.04932789
rs10000023-124_B_F_IFB1136477253:0 -0.02828753
rs10000030-124_B_R_IFB1137703207:0 -0.3407961
rs10000041-124_T_R_IFB1138580443:0 -0.2689059
rs1000007-124_T_F_IFB1135763903:0 0.0182118
rs10000081-124_B_F_IFB1142608068:0 -0.7604137
rs10000092-124_T_R_IFB1136459723:0 -0.02020549
rs10000121-124_B_R_IFB1136471760:0 -0.5281785
rs10000134-124_T_R_IFB1140474257:0 0.0714221
rs1000014-124_B_R_IFB1136184019:0 -0.2017671
rs10000141-124_T_F_IFB1137734411:0 -0.1418502
rs10000143-124_T_R_IFB1141671490:0 -0.06525345
rs1000016-124_B_R_IFB1135100999:0 -0.3985297
rs10000160-124_T_F_IFB1139532456:0 -0.2434413
rs10000169-124_T_R_IFB1135612081:0 0.1928261
rs10000185-124_B_F_IFB1138742483:0 -0.1656799
rs10000201-124_T_F_IFB1139525076:0 0.07365465
rs1000022-124_B_F_IFB1135126284:0 0.07593731
rs10000226-124_B_F_IFB1141217968:0 0.03796991

Total number of rows: 555175

Table truncated, full table size 24388 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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