NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM488501 Query DataSets for GSM488501
Status Public on Sep 15, 2011
Title CHOP1106
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 2
mycn: 2
age: 315
shimada: 1
sex: 1
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.0151554
rs10000010-124_B_F_IFB1137743663:0 -0.1170663
rs10000023-124_B_F_IFB1136477253:0 -0.1087214
rs10000030-124_B_R_IFB1137703207:0 -0.4070997
rs10000041-124_T_R_IFB1138580443:0 0.2143898
rs1000007-124_T_F_IFB1135763903:0 -0.0129853
rs10000081-124_B_F_IFB1142608068:0 -1.3983574
rs10000092-124_T_R_IFB1136459723:0 0.5532697
rs10000121-124_B_R_IFB1136471760:0 -0.7674796
rs10000134-124_T_R_IFB1140474257:0 0.093671
rs1000014-124_B_R_IFB1136184019:0 0.0786521
rs10000141-124_T_F_IFB1137734411:0 0.0652647
rs10000143-124_T_R_IFB1141671490:0 -0.0633327
rs1000016-124_B_R_IFB1135100999:0 -0.207626
rs10000160-124_T_F_IFB1139532456:0 -0.1371993
rs10000169-124_T_R_IFB1135612081:0 0.0539753
rs10000185-124_B_F_IFB1138742483:0 -0.2298165
rs10000201-124_T_F_IFB1139525076:0 0.1908133
rs1000022-124_B_F_IFB1135126284:0 -0.2836104
rs10000226-124_B_F_IFB1141217968:0 -0.1394428

Total number of rows: 555175

Table truncated, full table size 24136 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap