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Sample GSM488512 Query DataSets for GSM488512
Status Public on Sep 15, 2011
Title CHOP1135
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 2
age: 406
shimada: 2
sex: 1
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.0023471
rs10000010-124_B_F_IFB1137743663:0 -0.3067097
rs10000023-124_B_F_IFB1136477253:0 0.0588048
rs10000030-124_B_R_IFB1137703207:0 -0.3006213
rs10000041-124_T_R_IFB1138580443:0 -0.1705852
rs1000007-124_T_F_IFB1135763903:0 -0.2188034
rs10000081-124_B_F_IFB1142608068:0 -1.1098809
rs10000092-124_T_R_IFB1136459723:0 -0.4692998
rs10000121-124_B_R_IFB1136471760:0 -0.2785167
rs10000134-124_T_R_IFB1140474257:0 0.1586892
rs1000014-124_B_R_IFB1136184019:0 -0.1784176
rs10000141-124_T_F_IFB1137734411:0 -0.2308782
rs10000143-124_T_R_IFB1141671490:0 0.1435597
rs1000016-124_B_R_IFB1135100999:0 -0.3001542
rs10000160-124_T_F_IFB1139532456:0 -0.5013615
rs10000169-124_T_R_IFB1135612081:0 0.0320071
rs10000185-124_B_F_IFB1138742483:0 -0.5570213
rs10000201-124_T_F_IFB1139525076:0 -0.1664933
rs1000022-124_B_F_IFB1135126284:0 -0.0935855
rs10000226-124_B_F_IFB1141217968:0 0.2476197

Total number of rows: 555175

Table truncated, full table size 24122 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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