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Sample GSM488446 Query DataSets for GSM488446
Status Public on Sep 15, 2011
Title CHOP0962
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 3
risk: 1
mycn: 2
age: 2593
shimada: 2
sex: 1
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.1314679
rs10000010-124_B_F_IFB1137743663:0 -0.103903
rs10000023-124_B_F_IFB1136477253:0 0.1186064
rs10000030-124_B_R_IFB1137703207:0 -0.3325289
rs10000041-124_T_R_IFB1138580443:0 0.6659104
rs1000007-124_T_F_IFB1135763903:0 -0.0314434
rs10000081-124_B_F_IFB1142608068:0 -0.2107864
rs10000092-124_T_R_IFB1136459723:0 -0.1222335
rs10000121-124_B_R_IFB1136471760:0 -0.4464278
rs10000134-124_T_R_IFB1140474257:0 0.0042857
rs1000014-124_B_R_IFB1136184019:0 0.0220974
rs10000141-124_T_F_IFB1137734411:0 0.1242794
rs10000143-124_T_R_IFB1141671490:0 0.0647026
rs1000016-124_B_R_IFB1135100999:0 -0.3056256
rs10000160-124_T_F_IFB1139532456:0 -0.0968557
rs10000169-124_T_R_IFB1135612081:0 0.0751098
rs10000185-124_B_F_IFB1138742483:0 0.0185234
rs10000201-124_T_F_IFB1139525076:0 0.3862558
rs1000022-124_B_F_IFB1135126284:0 -0.2809093
rs10000226-124_B_F_IFB1141217968:0 -0.040431

Total number of rows: 555175

Table truncated, full table size 24134 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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