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Sample GSM488476 Query DataSets for GSM488476
Status Public on Sep 15, 2011
Title CHOP1029
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 3
risk: 1
mycn: 2
age: 564
shimada: 2
sex: 1
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.2004232
rs10000010-124_B_F_IFB1137743663:0 -0.4168262
rs10000023-124_B_F_IFB1136477253:0 0.1779073
rs10000030-124_B_R_IFB1137703207:0 -0.1055907
rs10000041-124_T_R_IFB1138580443:0 0.557903
rs1000007-124_T_F_IFB1135763903:0 0.0340313
rs10000081-124_B_F_IFB1142608068:0 -0.292113
rs10000092-124_T_R_IFB1136459723:0 -0.0049524
rs10000121-124_B_R_IFB1136471760:0 -0.6702005
rs10000134-124_T_R_IFB1140474257:0 0.061074
rs1000014-124_B_R_IFB1136184019:0 0.0156264
rs10000141-124_T_F_IFB1137734411:0 0.0956915
rs10000143-124_T_R_IFB1141671490:0 0.0470295
rs1000016-124_B_R_IFB1135100999:0 -0.117084
rs10000160-124_T_F_IFB1139532456:0 -0.3641577
rs10000169-124_T_R_IFB1135612081:0 -0.0157564
rs10000185-124_B_F_IFB1138742483:0 -0.1872983
rs10000201-124_T_F_IFB1139525076:0 0.2488044
rs1000022-124_B_F_IFB1135126284:0 0.0527214
rs10000226-124_B_F_IFB1141217968:0 -0.0143659

Total number of rows: 555175

Table truncated, full table size 24134 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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