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Sample GSM488422 Query DataSets for GSM488422
Status Public on Sep 15, 2011
Title CHOP0433
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 1
age: 1083
shimada: 2
sex: 2
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.03933851
rs10000010-124_B_F_IFB1137743663:0 0.05120231
rs10000023-124_B_F_IFB1136477253:0 -0.01507714
rs10000030-124_B_R_IFB1137703207:0 -0.1089107
rs10000041-124_T_R_IFB1138580443:0 0.1321529
rs1000007-124_T_F_IFB1135763903:0 0.006106589
rs10000081-124_B_F_IFB1142608068:0 -0.3404387
rs10000092-124_T_R_IFB1136459723:0 0.2482481
rs10000121-124_B_R_IFB1136471760:0 -0.3986687
rs10000134-124_T_R_IFB1140474257:0 0.164052
rs1000014-124_B_R_IFB1136184019:0 -0.09340825
rs10000141-124_T_F_IFB1137734411:0 0.1549961
rs10000143-124_T_R_IFB1141671490:0 0.0403234
rs1000016-124_B_R_IFB1135100999:0 -0.1700002
rs10000160-124_T_F_IFB1139532456:0 -0.06091033
rs10000169-124_T_R_IFB1135612081:0 0.1647558
rs10000185-124_B_F_IFB1138742483:0 0.1351176
rs10000201-124_T_F_IFB1139525076:0 0.1871395
rs1000022-124_B_F_IFB1135126284:0 0.01884954
rs10000226-124_B_F_IFB1141217968:0 0.07954038

Total number of rows: 555175

Table truncated, full table size 24384 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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