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Sample GSM488536 Query DataSets for GSM488536
Status Public on Sep 15, 2011
Title CHOP1200
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 2
mycn: 2
age: 319
shimada: 1
sex: 2
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.1369547
rs10000010-124_B_F_IFB1137743663:0 -0.1709426
rs10000023-124_B_F_IFB1136477253:0 -0.0611192
rs10000030-124_B_R_IFB1137703207:0 -0.1618885
rs10000041-124_T_R_IFB1138580443:0 0.277062
rs1000007-124_T_F_IFB1135763903:0 -0.3292387
rs10000081-124_B_F_IFB1142608068:0 -0.1541865
rs10000092-124_T_R_IFB1136459723:0 -0.4119497
rs10000121-124_B_R_IFB1136471760:0 -0.6933425
rs10000134-124_T_R_IFB1140474257:0 0.1913036
rs1000014-124_B_R_IFB1136184019:0 0.0898906
rs10000141-124_T_F_IFB1137734411:0 0.144363
rs10000143-124_T_R_IFB1141671490:0 0.0555708
rs1000016-124_B_R_IFB1135100999:0 -0.2350984
rs10000160-124_T_F_IFB1139532456:0 -0.0705234
rs10000169-124_T_R_IFB1135612081:0 -0.0004832
rs10000185-124_B_F_IFB1138742483:0 -0.0557077
rs10000201-124_T_F_IFB1139525076:0 0.0515656
rs1000022-124_B_F_IFB1135126284:0 -0.3466611
rs10000226-124_B_F_IFB1141217968:0 0.0119181

Total number of rows: 555175

Table truncated, full table size 24136 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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