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Sample GSM488397 Query DataSets for GSM488397
Status Public on Sep 15, 2011
Title CHOP0321
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 2
age: 2451
shimada: NA
sex: 2
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.087305
rs10000010-124_B_F_IFB1137743663:0 0.2162282
rs10000023-124_B_F_IFB1136477253:0 -0.165026
rs10000030-124_B_R_IFB1137703207:0 -0.0621339
rs10000041-124_T_R_IFB1138580443:0 -0.5620052
rs1000007-124_T_F_IFB1135763903:0 -0.0732015
rs10000081-124_B_F_IFB1142608068:0 0.0152943
rs10000092-124_T_R_IFB1136459723:0 0.1992955
rs10000121-124_B_R_IFB1136471760:0 -0.2419628
rs10000134-124_T_R_IFB1140474257:0 0.1385672
rs1000014-124_B_R_IFB1136184019:0 -0.1505471
rs10000141-124_T_F_IFB1137734411:0 -0.0338131
rs10000143-124_T_R_IFB1141671490:0 0.1146195
rs1000016-124_B_R_IFB1135100999:0 -0.2973959
rs10000160-124_T_F_IFB1139532456:0 -0.2133948
rs10000169-124_T_R_IFB1135612081:0 0.2004996
rs10000185-124_B_F_IFB1138742483:0 -0.1490644
rs10000201-124_T_F_IFB1139525076:0 0.3413271
rs1000022-124_B_F_IFB1135126284:0 -0.1886208
rs10000226-124_B_F_IFB1141217968:0 0.0925075

Total number of rows: 555175

Table truncated, full table size 24150 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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