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Sample GSM488502 Query DataSets for GSM488502
Status Public on Sep 15, 2011
Title CHOP1110
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 1
age: 860
shimada: 2
sex: 1
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.1877988
rs10000010-124_B_F_IFB1137743663:0 0.3616428
rs10000023-124_B_F_IFB1136477253:0 -0.4361274
rs10000030-124_B_R_IFB1137703207:0 -0.0047498
rs10000041-124_T_R_IFB1138580443:0 -0.0679537
rs1000007-124_T_F_IFB1135763903:0 -0.31925
rs10000081-124_B_F_IFB1142608068:0 -0.4557353
rs10000092-124_T_R_IFB1136459723:0 0.2960541
rs10000121-124_B_R_IFB1136471760:0 -0.3478219
rs10000134-124_T_R_IFB1140474257:0 0.3363342
rs1000014-124_B_R_IFB1136184019:0 -0.1357585
rs10000141-124_T_F_IFB1137734411:0 0.0781489
rs10000143-124_T_R_IFB1141671490:0 0.2324402
rs1000016-124_B_R_IFB1135100999:0 -0.1634222
rs10000160-124_T_F_IFB1139532456:0 -0.0775302
rs10000169-124_T_R_IFB1135612081:0 -0.4406082
rs10000185-124_B_F_IFB1138742483:0 -0.0236268
rs10000201-124_T_F_IFB1139525076:0 0.5260439
rs1000022-124_B_F_IFB1135126284:0 -0.278014
rs10000226-124_B_F_IFB1141217968:0 -0.0811015

Total number of rows: 555175

Table truncated, full table size 24145 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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