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Sample GSM488465 Query DataSets for GSM488465
Status Public on Sep 15, 2011
Title CHOP0980
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 4
risk: 2
mycn: 2
age: 370
shimada: 1
sex: 1
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.0722528
rs10000010-124_B_F_IFB1137743663:0 0.1598117
rs10000023-124_B_F_IFB1136477253:0 0.1081409
rs10000030-124_B_R_IFB1137703207:0 -0.0273148
rs10000041-124_T_R_IFB1138580443:0 0.1877106
rs1000007-124_T_F_IFB1135763903:0 -0.2510599
rs10000081-124_B_F_IFB1142608068:0 -0.0441959
rs10000092-124_T_R_IFB1136459723:0 0.3364296
rs10000121-124_B_R_IFB1136471760:0 0.1413401
rs10000134-124_T_R_IFB1140474257:0 0.3072771
rs1000014-124_B_R_IFB1136184019:0 -0.6206595
rs10000141-124_T_F_IFB1137734411:0 0.0879502
rs10000143-124_T_R_IFB1141671490:0 0.2750466
rs1000016-124_B_R_IFB1135100999:0 0.0223904
rs10000160-124_T_F_IFB1139532456:0 -0.1085121
rs10000169-124_T_R_IFB1135612081:0 0.1212989
rs10000185-124_B_F_IFB1138742483:0 -0.1905334
rs10000201-124_T_F_IFB1139525076:0 0.317903
rs1000022-124_B_F_IFB1135126284:0 0.2094074
rs10000226-124_B_F_IFB1141217968:0 0.1104171

Total number of rows: 555175

Table truncated, full table size 24114 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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