NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM488415 Query DataSets for GSM488415
Status Public on Sep 15, 2011
Title CHOP0417
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 4
risk: 2
mycn: 2
age: 215
shimada: 1
sex: 2
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.1317546
rs10000010-124_B_F_IFB1137743663:0 0.4026833
rs10000023-124_B_F_IFB1136477253:0 0.1082221
rs10000030-124_B_R_IFB1137703207:0 -0.03658096
rs10000041-124_T_R_IFB1138580443:0 0.1009458
rs1000007-124_T_F_IFB1135763903:0 -0.05074656
rs10000081-124_B_F_IFB1142608068:0 -0.2004026
rs10000092-124_T_R_IFB1136459723:0 0.3481692
rs10000121-124_B_R_IFB1136471760:0 -0.0381304
rs10000134-124_T_R_IFB1140474257:0 0.2231494
rs1000014-124_B_R_IFB1136184019:0 -0.4320289
rs10000141-124_T_F_IFB1137734411:0 0.2667402
rs10000143-124_T_R_IFB1141671490:0 0.1762208
rs1000016-124_B_R_IFB1135100999:0 -0.06561369
rs10000160-124_T_F_IFB1139532456:0 -0.02902413
rs10000169-124_T_R_IFB1135612081:0 0.3283669
rs10000185-124_B_F_IFB1138742483:0 -0.2091678
rs10000201-124_T_F_IFB1139525076:0 0.3381788
rs1000022-124_B_F_IFB1135126284:0 -0.03683115
rs10000226-124_B_F_IFB1141217968:0 0.3029903

Total number of rows: 555175

Table truncated, full table size 24327 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap