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Platform GPL23126 Query DataSets for GPL23126
Status Public on Feb 28, 2017
Title [Clariom_D_Human] Affymetrix Human Clariom D Assay [transcript (gene) version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol See manufacturers website
 
Description Annotation was derived from the Affymetrix annotation file Clariom_D_Human.na36.hg38.transcript.csv:

#%create_date=Mon Jun 20 14:19:01 2016 PDT
#%chip_type=Clariom_D_Human
#%lib_set_name=Clariom_D_Human
#%lib_set_version=r1
#%genome-species=Homo sapiens
#%genome-version=hg38
#%genome-version-ucsc=hg38
#%genome-version-ncbi=GRCh38
#%genome-version-create_date=2013-12-00
#%genome-lifted-method=psl-map.pl
#%genome-lifted_from-species=Homo sapiens
#%genome-lifted_from-version-ucsc=hg38
#%genome-lifted_from-version-ncbi=GRCh38
#%netaffx-annotation-date=2016-06-03
#%netaffx-annotation-netaffx-build=36
 
Submission date Feb 28, 2017
Last update date Oct 16, 2018
Organization Affymetrix, Inc.
E-mail(s) [email protected], [email protected]
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (6209) GSM2437585, GSM2437586, GSM2437587, GSM2437588, GSM2437589, GSM2437590 
Series (286)
GSE92780 Heterogeneous tumor-immune microenvironments among differentially growing metastases in an ovarian cancer patient
GSE95485 Effect of Lipiodol on Dendritic Cell
GSE97791 Analysis of BRD4-regulated genes in human glioma U251 cells
Relations
Alternative to GPL25401 (Alternative CDF: ClariomDHuman_Hs_GENECODEG_22.0.0)
Alternative to GPL25683 (Alternative CDF: ClariomSHuman_Hs_ENTREZG, version 22)

Data table header descriptions
ID transcript_cluster_id
probeset_id
seqname
strand
start
stop
total_probes
gene_assignment
mrna_assignment
swissprot
unigene
GO_biological_process
GO_cellular_component
GO_molecular_function
pathway
protein_domains
category
locus type
SPOT_ID

Data table
ID probeset_id seqname strand start stop total_probes gene_assignment mrna_assignment swissprot unigene GO_biological_process GO_cellular_component GO_molecular_function pathway protein_domains category locus type SPOT_ID
TC0100006432.hg.1 TC0100006432.hg.1 chr1 + 11869 14412 10 NR_046018 // DDX11L1 // DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 1 // 1p36.33 // 100287102 /// OTTHUMT00000002844 // DDX11L1 // DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 1 // 1p36.33 // 100287102 /// OTTHUMT00000362751 // DDX11L1 // DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 1 // 1p36.33 // 100287102 NR_046018 // RefSeq // Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 1 (DDX11L1), non-coding RNA. // chr1 // 100 // 100 // 0 // --- // 0 /// OTTHUMT00000002844 // Havana transcript // DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 1[gene_biotype:transcribed_unprocessed_pseudogene transcript_biotype:transcribed_unprocessed_pseudogene] // chr1 // 100 // 100 // 0 // --- // 0 /// OTTHUMT00000362751 // Havana transcript // DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 1[gene_biotype:transcribed_unprocessed_pseudogene transcript_biotype:processed_transcript] // chr1 // 100 // 100 // 0 // --- // 0 /// ENST00000450305 // ENSEMBL // DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 1 [gene_biotype:transcribed_unprocessed_pseudogene transcript_biotype:transcribed_unprocessed_pseudogene] // chr1 // 100 // 100 // 0 // --- // 0 /// ENST00000456328 // ENSEMBL // DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 1 [gene_biotype:transcribed_unprocessed_pseudogene transcript_biotype:processed_transcript] // chr1 // 100 // 100 // 0 // --- // 0 /// NONHSAT000001 // lncRNAWiki // Non-coding transcript identified by NONCODE // chr1 // 100 // 100 // 0 // --- // 0 /// NONHSAT000001 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 100 // 100 // 0 // --- // 0 /// NONHSAT000002 // lncRNAWiki // Non-coding transcript identified by NONCODE // chr1 // 100 // 100 // 0 // --- // 0 /// NONHSAT000002 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 100 // 100 // 0 // --- // 0 /// NONHSAT000003 // lncRNAWiki // Non-coding transcript identified by NONCODE // chr1 // 100 // 100 // 0 // --- // 0 /// NONHSAT000003 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 100 // 100 // 0 // --- // 0 /// NONHSAT000004 // lncRNAWiki // Non-coding transcript identified by NONCODE // chr1 // 100 // 100 // 0 // --- // 0 /// NONHSAT000004 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 100 // 100 // 0 // --- // 0 NR_046018 // B7ZGX0 /// NR_046018 // B7ZGX2 /// NR_046018 // B7ZGX7 /// NR_046018 // B7ZGX8 /// OTTHUMT00000002844 // B7ZGX0 /// OTTHUMT00000002844 // B7ZGX2 /// OTTHUMT00000002844 // B7ZGX7 /// OTTHUMT00000002844 // B7ZGX8 /// OTTHUMT00000362751 // B7ZGX0 /// OTTHUMT00000362751 // B7ZGX2 /// OTTHUMT00000362751 // B7ZGX7 /// OTTHUMT00000362751 // B7ZGX8 /// ENST00000450305 // B7ZGX0 /// ENST00000450305 // B7ZGX2 /// ENST00000450305 // B7ZGX7 /// ENST00000450305 // B7ZGX8 /// ENST00000450305 // B4E2Z4 /// ENST00000450305 // B7ZGW9 /// ENST00000450305 // Q6ZU42 /// ENST00000450305 // B7ZGX3 /// ENST00000450305 // B5WYT6 /// ENST00000456328 // B7ZGX0 /// ENST00000456328 // B7ZGX2 /// ENST00000456328 // B7ZGX7 /// ENST00000456328 // B7ZGX8 /// ENST00000456328 // B4E2Z4 /// ENST00000456328 // B7ZGW9 /// ENST00000456328 // Q6ZU42 /// ENST00000456328 // B7ZGX3 /// ENST00000456328 // B5WYT6 NR_046018 // Hs.714157 // testis| normal| adult /// OTTHUMT00000002844 // Hs.714157 // testis| normal| adult /// OTTHUMT00000362751 // Hs.714157 // testis| normal| adult /// ENST00000450305 // Hs.719844 // brain| testis| normal /// ENST00000450305 // Hs.714157 // testis| normal| adult /// ENST00000450305 // Hs.740212 // --- /// ENST00000450305 // Hs.712940 // bladder| bone marrow| brain| embryonic tissue| intestine| mammary gland| muscle| pharynx| placenta| prostate| skin| spleen| stomach| testis| thymus| breast (mammary gland) tumor| gastrointestinal tumor| glioma| non-neoplasia| normal| prostate cancer| skin tumor| soft tissue/muscle tissue tumor|embryoid body| adult /// ENST00000456328 // Hs.719844 // brain| testis| normal /// ENST00000456328 // Hs.714157 // testis| normal| adult /// ENST00000456328 // Hs.740212 // --- /// ENST00000456328 // Hs.712940 // bladder| bone marrow| brain| embryonic tissue| intestine| mammary gland| muscle| pharynx| placenta| prostate| skin| spleen| stomach| testis| thymus| breast (mammary gland) tumor| gastrointestinal tumor| glioma| non-neoplasia| normal| prostate cancer| skin tumor| soft tissue/muscle tissue tumor|embryoid body| adult ENST00000450305 // GO:0006139 // nucleobase-containing compound metabolic process // inferred from electronic annotation /// ENST00000456328 // GO:0006139 // nucleobase-containing compound metabolic process // inferred from electronic annotation --- ENST00000450305 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// ENST00000450305 // GO:0005524 // ATP binding // inferred from electronic annotation /// ENST00000450305 // GO:0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// ENST00000450305 // GO:0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation /// ENST00000456328 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// ENST00000456328 // GO:0005524 // ATP binding // inferred from electronic annotation /// ENST00000456328 // GO:0008026 // ATP-dependent helicase activity // inferred from electronic annotation /// ENST00000456328 // GO:0016818 // hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides // inferred from electronic annotation --- --- main Multiple_Complex NR_046018 // RefSeq
TC0100006433.hg.1 TC0100006433.hg.1 chr1 + 28046 29178 6 spopoybu.aAug10-unspliced // spopoybu // Transcript Identified by AceView // --- // --- spopoybu.aAug10-unspliced // Ace View // Transcript Identified by AceView // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main Coding spopoybu.aAug10-unspliced // Ace View
TC0100006434.hg.1 TC0100006434.hg.1 chr1 + 29554 31109 10 NR_036267 // MIR1302-10 // microRNA 1302-10 // --- // 100422834 /// ENST00000607096 // MIR1302-2 // microRNA 1302-2 // --- // 100302278 NR_036267 // RefSeq // Homo sapiens microRNA 1302-10 (MIR1302-10), microRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENST00000607096 // ENSEMBL // microRNA 1302-2 [gene_biotype:miRNA transcript_biotype:miRNA] // chr1 // 100 // 100 // 0 // --- // 0 /// NR_036051_3 // RefSeq // Homo sapiens microRNA 1302-2 (MIR1302-2), microRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// NR_036266_3 // RefSeq // Homo sapiens microRNA 1302-9 (MIR1302-9), microRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// NR_036268_4 // RefSeq // Homo sapiens microRNA 1302-11 (MIR1302-11), microRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENST00000469289 // ENSEMBL // havana:known chromosome:GRCh38:1:30267:31109:1 gene:ENSG00000243485 gene_biotype:lincRNA transcript_biotype:lincRNA // chr1 // 100 // 100 // 0 // --- // 0 /// ENST00000473358 // ENSEMBL // havana:known chromosome:GRCh38:1:29554:31097:1 gene:ENSG00000243485 gene_biotype:lincRNA transcript_biotype:lincRNA // chr1 // 100 // 100 // 0 // --- // 0 /// ENST00000469289.1 // lncRNAWiki // microRNA 1302-11 [Source:HGNC Symbol;Acc:HGNC:38246] // chr1 // 100 // 100 // 0 // --- // 0 /// ENST00000473358.1 // lncRNAWiki // microRNA 1302-11 [Source:HGNC Symbol;Acc:HGNC:38246] // chr1 // 100 // 100 // 0 // --- // 0 /// ENST00000607096.1 // lncRNAWiki // microRNA 1302-11 [Source:HGNC Symbol;Acc:38246] // chr1 // 100 // 100 // 0 // --- // 0 /// OTTHUMT00000002840 // Havana transcript // novel transcript // chr1 // 100 // 100 // 0 // --- // 0 /// OTTHUMT00000002841 // Havana transcript // novel transcript // chr1 // 100 // 100 // 0 // --- // 0 /// uc031tlb.1 // UCSC Genes // microRNA 1302-2 [Source:HGNC Symbol;Acc:HGNC:35294] // chr1 // 100 // 100 // 0 // --- // 0 /// uc057aty.1 // UCSC Genes // N/A // chr1 // 100 // 100 // 0 // --- // 0 /// uc057atz.1 // UCSC Genes // N/A // chr1 // 100 // 100 // 0 // --- // 0 /// HG491497.1:1..712:ncRNA // RNACentral // long non-coding RNA OTTHUMT00000002840.1 (RP11-34P13.3 gene // chr1 // 100 // 100 // 0 // --- // 0 /// HG491498.1:1..535:ncRNA // RNACentral // long non-coding RNA OTTHUMT00000002841.2 (RP11-34P13.3 gene // chr1 // 100 // 100 // 0 // --- // 0 /// LM610125.1:1..138:precursor_RNA // RNACentral // microRNA hsa-mir-1302-9 precursor // chr1 // 100 // 100 // 0 // --- // 0 /// NONHSAT000011 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 100 // 100 // 0 // --- // 0 /// NONHSAT000012 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 100 // 100 // 0 // --- // 0 /// NR_036051.1:1..138:precursor_RNA // RNACentral // microRNA hsa-mir-1302-9 precursor // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main Multiple_Complex NR_036267 // RefSeq
TC0100006435.hg.1 TC0100006435.hg.1 chr1 + 52473 53312 10 OTTHUMT00000471235 // OR4G4P // olfactory receptor, family 4, subfamily G, member 4 pseudogene // 1p36.33 // 79504 OTTHUMT00000471235 // Havana transcript // lfactory receptor, family 4, subfamily G, member 4 pseudogene[gene_biotype:unprocessed_pseudogene transcript_biotype:unprocessed_pseudogene] // chr1 // 100 // 100 // 0 // --- // 0 /// ENST00000606857 // ENSEMBL // olfactory receptor, family 4, subfamily G, member 4 pseudogene [gene_biotype:unprocessed_pseudogene transcript_biotype:unprocessed_pseudogene] // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main Pseudogene OTTHUMT00000471235 // Havana transcript
TC0100006436.hg.1 TC0100006436.hg.1 chr1 + 62948 63887 10 ENST00000492842 // OR4G2P // olfactory receptor, family 4, subfamily G, member 2 pseudogene // 15q26 // 26680 /// OTTHUMT00000003224 // OR4G11P // olfactory receptor, family 4, subfamily G, member 11 pseudogene // 1p36.33 // 403263 ENST00000492842 // ENSEMBL // olfactory receptor, family 4, subfamily G, member 11 pseudogene [gene_biotype:unprocessed_pseudogene transcript_biotype:unprocessed_pseudogene] // chr1 // 100 // 100 // 0 // --- // 0 /// OTTHUMT00000003224 // Havana transcript // olfactory receptor, family 4, subfamily G, member 11 pseudogene[gene_biotype:unprocessed_pseudogene transcript_biotype:unprocessed_pseudogene] // chr1 // 100 // 100 // 0 // --- // 0 /// NONHSAT000016 // lncRNAWiki // Non-coding transcript identified by NONCODE // chr1 // 100 // 100 // 0 // --- // 0 /// NONHSAT000016 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main Multiple_Complex ENST00000492842 // ENSEMBL
TC0100006437.hg.1 TC0100006437.hg.1 chr1 + 69091 70008 10 NM_001005484 // OR4F5 // olfactory receptor, family 4, subfamily F, member 5 // 1p36.33 // 79501 /// ENST00000335137 // OR4F5 // olfactory receptor, family 4, subfamily F, member 5 // 1p36.33 // 79501 /// OTTHUMT00000003223 // OR4F5 // olfactory receptor, family 4, subfamily F, member 5 // 1p36.33 // 79501 /// uc001aal.1 // OR4F5 // olfactory receptor, family 4, subfamily F, member 5 // 1p36.33 // 79501 NM_001005484 // RefSeq // Homo sapiens olfactory receptor, family 4, subfamily F, member 5 (OR4F5), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENST00000335137 // ENSEMBL // olfactory receptor, family 4, subfamily F, member 5 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// OTTHUMT00000003223 // Havana transcript // olfactory receptor, family 4, subfamily F, member 5[gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// uc001aal.1 // UCSC Genes // Homo sapiens olfactory receptor, family 4, subfamily F, member 5 (OR4F5), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// CCDS30547.1 // ccdsGene // olfactory receptor, family 4, subfamily F, member 5 [Source:HGNC Symbol;Acc:HGNC:14825] // chr1 // 100 // 100 // 0 // --- // 0 NM_001005484 // Q8NH21 /// ENST00000335137 // Q8NH21 NM_001005484 // Hs.554500 // --- /// ENST00000335137 // Hs.554500 // --- /// OTTHUMT00000003223 // Hs.554500 // --- /// uc001aal.1 // Hs.554500 // --- NM_001005484 // GO:0007186 // G-protein coupled receptor signaling pathway // not recorded /// NM_001005484 // GO:0050907 // detection of chemical stimulus involved in sensory perception // not recorded /// NM_001005484 // GO:0050911 // detection of chemical stimulus involved in sensory perception of smell // inferred from electronic annotation /// NM_001005484 // GO:0007165 // signal transduction // inferred from electronic annotation /// NM_001005484 // GO:0007186 // G-protein coupled receptor signaling pathway // --- /// NM_001005484 // GO:0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// NM_001005484 // GO:0007608 // sensory perception of smell // inferred from electronic annotation /// NM_001005484 // GO:0050896 // response to stimulus // inferred from electronic annotation /// NM_001005484 // GO:0050907 // detection of chemical stimulus involved in sensory perception // --- /// ENST00000335137 // GO:0007186 // G-protein coupled receptor signaling pathway // not recorded /// ENST00000335137 // GO:0050907 // detection of chemical stimulus involved in sensory perception // not recorded /// ENST00000335137 // GO:0050911 // detection of chemical stimulus involved in sensory perception of smell // inferred from electronic annotation /// ENST00000335137 // GO:0007186 // G-protein coupled receptor signaling pathway // --- /// ENST00000335137 // GO:0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// ENST00000335137 // GO:0050907 // detection of chemical stimulus involved in sensory perception // --- /// ENST00000335137 // GO:0007165 // signal transduction // inferred from electronic annotation /// ENST00000335137 // GO:0007608 // sensory perception of smell // inferred from electronic annotation /// ENST00000335137 // GO:0050896 // response to stimulus // inferred from electronic annotation /// OTTHUMT00000003223 // GO:0007186 // G-protein coupled receptor signaling pathway // not recorded /// OTTHUMT00000003223 // GO:0050907 // detection of chemical stimulus involved in sensory perception // not recorded /// OTTHUMT00000003223 // GO:0050911 // detection of chemical stimulus involved in sensory perception of smell // inferred from electronic annotation /// OTTHUMT00000003223 // GO:0007165 // signal transduction // inferred from electronic annotation /// OTTHUMT00000003223 // GO:0007186 // G-protein coupled receptor signaling pathway // --- /// OTTHUMT00000003223 // GO:0007608 // sensory perception of smell // inferred from electronic annotation /// OTTHUMT00000003223 // GO:0050896 // response to stimulus // inferred from electronic annotation /// OTTHUMT00000003223 // GO:0050907 // detection of chemical stimulus involved in sensory perception // --- /// uc001aal.1 // GO:0007186 // G-protein coupled receptor signaling pathway // not recorded /// uc001aal.1 // GO:0050907 // detection of chemical stimulus involved in sensory perception // not recorded /// uc001aal.1 // GO:0050911 // detection of chemical stimulus involved in sensory perception of smell // inferred from electronic annotation NM_001005484 // GO:0005886 // plasma membrane // traceable author statement /// NM_001005484 // GO:0016021 // integral component of membrane // not recorded /// NM_001005484 // GO:0005886 // plasma membrane // inferred from electronic annotation /// NM_001005484 // GO:0016020 // membrane // inferred from electronic annotation /// NM_001005484 // GO:0016021 // integral component of membrane // --- /// NM_001005484 // GO:0016021 // integral component of membrane // inferred from electronic annotation /// ENST00000335137 // GO:0005886 // plasma membrane // traceable author statement /// ENST00000335137 // GO:0016021 // integral component of membrane // not recorded /// ENST00000335137 // GO:0016021 // integral component of membrane // --- /// ENST00000335137 // GO:0016021 // integral component of membrane // inferred from electronic annotation /// ENST00000335137 // GO:0005886 // plasma membrane // inferred from electronic annotation /// ENST00000335137 // GO:0016020 // membrane // inferred from electronic annotation /// OTTHUMT00000003223 // GO:0005886 // plasma membrane // traceable author statement /// OTTHUMT00000003223 // GO:0016021 // integral component of membrane // not recorded /// OTTHUMT00000003223 // GO:0016021 // integral component of membrane // --- /// OTTHUMT00000003223 // GO:0016020 // membrane // inferred from electronic annotation /// uc001aal.1 // GO:0005886 // plasma membrane // traceable author statement /// uc001aal.1 // GO:0016021 // integral component of membrane // not recorded NM_001005484 // GO:0004888 // transmembrane signaling receptor activity // not recorded /// NM_001005484 // GO:0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// NM_001005484 // GO:0004984 // olfactory receptor activity // inferred from electronic annotation /// NM_001005484 // GO:0004871 // signal transducer activity // inferred from electronic annotation /// NM_001005484 // GO:0004888 // transmembrane signaling receptor activity // --- /// ENST00000335137 // GO:0004888 // transmembrane signaling receptor activity // not recorded /// ENST00000335137 // GO:0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// ENST00000335137 // GO:0004984 // olfactory receptor activity // inferred from electronic annotation /// ENST00000335137 // GO:0004888 // transmembrane signaling receptor activity // --- /// ENST00000335137 // GO:0004871 // signal transducer activity // inferred from electronic annotation /// OTTHUMT00000003223 // GO:0004888 // transmembrane signaling receptor activity // not recorded /// OTTHUMT00000003223 // GO:0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// OTTHUMT00000003223 // GO:0004984 // olfactory receptor activity // inferred from electronic annotation /// OTTHUMT00000003223 // GO:0004871 // signal transducer activity // inferred from electronic annotation /// OTTHUMT00000003223 // GO:0004888 // transmembrane signaling receptor activity // --- /// uc001aal.1 // GO:0004888 // transmembrane signaling receptor activity // not recorded /// uc001aal.1 // GO:0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// uc001aal.1 // GO:0004984 // olfactory receptor activity // inferred from electronic annotation --- OTTHUMT00000003223 // Pfam // IPR000276 // G protein-coupled receptor, rhodopsin-like /// OTTHUMT00000003223 // Pfam // IPR019424 // Serpentine type 7TM GPCR chemoreceptor Srsx main Coding NM_001005484 // RefSeq
TC0100006438.hg.1 TC0100006438.hg.1 chr1 + 131025 139723 10 ENST00000442987 // CICP27 // capicua transcriptional repressor pseudogene 27 [Source:HGNC Symbol;Acc:HGNC:48835] // --- // --- ENST00000442987 // ENSEMBL // capicua transcriptional repressor pseudogene 27 [gene_biotype:processed_pseudogene transcript_biotype:processed_pseudogene] // chr1 // 100 // 100 // 0 // --- // 0 /// NONHSAT000024 // lncRNAWiki // Non-coding transcript identified by NONCODE // chr1 // 100 // 100 // 0 // --- // 0 /// NONHSAT000024 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 100 // 100 // 0 // --- // 0 /// OTTHUMT00000003691 // Havana transcript // capicua homolog (Drosophila) (CIC) pseudogene[gene_biotype:processed_pseudogene transcript_biotype:processed_pseudogene] // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00000001 // lncRNA Db // Hg19:chr1:+:134766-139723 // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00000002 // lncRNA Db // Hg19:chr1:+:134766-139723 // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00001922 // lncRNA Db // Hg19:chr1:+:134772-139697 // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00001923 // lncRNA Db // Hg19:chr1:+:134772-139697 // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main Multiple_Complex ENST00000442987 // ENSEMBL
TC0100006439.hg.1 TC0100006439.hg.1 chr1 + 150309 151388 10 --- NONHSAT000035 // lncRNAWiki // Non-coding transcript identified by NONCODE // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main NonCoding NONHSAT000035 // lncRNAWiki
TC0100006440.hg.1 TC0100006440.hg.1 chr1 + 160446 161525 10 ENST00000496488.1 // RP11-34P13.9 // --- // --- // --- /// OTTHUMT00000007169 // RP11-34P13.9 // putative novel transcript // --- // --- /// uc057aum.1 // RP11-34P13.9 // --- // --- // --- ENST00000496488.1 // lncRNAWiki // N/A // chr1 // 100 // 100 // 0 // --- // 0 /// OTTHUMT00000007169 // Havana transcript // putative novel transcript // chr1 // 100 // 100 // 0 // --- // 0 /// uc057aum.1 // UCSC Genes // N/A // chr1 // 100 // 100 // 0 // --- // 0 /// ENST00000496488 // ENSEMBL // havana:known chromosome:GRCh38:1:160446:161525:1 gene:ENSG00000241599 gene_biotype:lincRNA transcript_biotype:lincRNA // chr1 // 100 // 100 // 0 // --- // 0 /// HG491507.1:1..457:ncRNA // RNACentral // long non-coding RNA OTTHUMT00000007169.1 (RP11-34P13.9 gene // chr1 // 100 // 100 // 0 // --- // 0 /// NONHSAT000038 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_00000119 // lncRNA Db // gene_id XLOC_000001; transcript_id TCONS_00000119; oId ENST00000496488; linc_name linc-OR4F16-10; tss_id TSS1; class_code u; gene_name linc-OR4F16-10; // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main NonCoding ENST00000496488.1 // lncRNAWiki
TC0100006441.hg.1 TC0100006441.hg.1 chr1 + 182393 184158 10 ENST00000624431 // LOC102725121 // putative ATP-dependent RNA helicase DDX12 // --- // 102725121 /// uc057auo.1 // FO538757.3 // Protein LOC102725121 [Source:UniProtKB/TrEMBL;Acc:A0A096LP88] // --- // --- ENST00000624431 // ENSEMBL // Protein LOC102725121 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// uc057auo.1 // UCSC Genes // Protein LOC102725121 [Source:UniProtKB/TrEMBL;Acc:A0A096LP88] // chr1 // 100 // 100 // 0 // --- // 0 ENST00000624431 // A0A096LP88 --- --- --- --- --- --- main Coding ENST00000624431 // ENSEMBL
TC0100006442.hg.1 TC0100006442.hg.1 chr1 + 200880 201017 10 uc031tlo.2 // FO538757.1 // --- // --- // --- uc031tlo.2 // UCSC Genes // N/A // chr1 // 100 // 100 // 0 // --- // 0 /// ENST00000611868 // ENSEMBL // ncrna:novel chromosome:GRCh38:1:200880:201017:1 gene:ENSG00000275135 gene_biotype:miRNA transcript_biotype:miRNA // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main Precursor_microRNA uc031tlo.2 // UCSC Genes
TC0100006443.hg.1 TC0100006443.hg.1 chr1 + 264430 264827 6 storubu.aAug10-unspliced // storubu // Transcript Identified by AceView // --- // --- storubu.aAug10-unspliced // Ace View // Transcript Identified by AceView // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main Coding storubu.aAug10-unspliced // Ace View
TC0100006444.hg.1 TC0100006444.hg.1 chr1 + 358857 365704 10 ENST00000412666.1 // RP4-669L17.2 // --- // --- // --- /// ENST00000450983.1 // RP4-669L17.2 // --- // --- // --- /// OTTHUMT00000007987 // RP4-669L17.2 // putative novel transcript // --- // --- /// OTTHUMT00000007988 // RP4-669L17.2 // putative novel transcript // --- // --- /// uc057aux.1 // RP4-669L17.2 // --- // --- // --- /// uc057auy.1 // RP4-669L17.2 // --- // --- // --- ENST00000412666.1 // lncRNAWiki // N/A // chr1 // 100 // 100 // 0 // --- // 0 /// ENST00000450983.1 // lncRNAWiki // N/A // chr1 // 100 // 100 // 0 // --- // 0 /// OTTHUMT00000007987 // Havana transcript // putative novel transcript // chr1 // 100 // 100 // 0 // --- // 0 /// OTTHUMT00000007988 // Havana transcript // putative novel transcript // chr1 // 100 // 100 // 0 // --- // 0 /// uc057aux.1 // UCSC Genes // N/A // chr1 // 100 // 100 // 0 // --- // 0 /// uc057auy.1 // UCSC Genes // N/A // chr1 // 100 // 100 // 0 // --- // 0 /// ENST00000412666 // ENSEMBL // havana:known chromosome:GRCh38:1:358872:365510:1 gene:ENSG00000236601 gene_biotype:lincRNA transcript_biotype:lincRNA // chr1 // 100 // 100 // 0 // --- // 0 /// ENST00000450983 // ENSEMBL // havana:known chromosome:GRCh38:1:358857:365704:1 gene:ENSG00000236601 gene_biotype:lincRNA transcript_biotype:lincRNA // chr1 // 100 // 100 // 0 // --- // 0 /// HG491526.1:1..607:ncRNA // RNACentral // long non-coding RNA OTTHUMT00000007988.2 (RP4-669L17.2 gene // chr1 // 100 // 100 // 0 // --- // 0 /// HG491527.1:1..426:ncRNA // RNACentral // long non-coding RNA OTTHUMT00000007987.2 (RP4-669L17.2 gene // chr1 // 100 // 100 // 0 // --- // 0 /// NONHSAT000074 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 100 // 100 // 0 // --- // 0 /// NONHSAT000075 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main NonCoding ENST00000412666.1 // lncRNAWiki
TC0100006445.hg.1 TC0100006445.hg.1 chr1 + 362335 362926 6 noymeybo.aAug10-unspliced // noymeybo // Transcript Identified by AceView // --- // --- noymeybo.aAug10-unspliced // Ace View // Transcript Identified by AceView // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main Unassigned noymeybo.aAug10-unspliced // Ace View
TC0100006446.hg.1 TC0100006446.hg.1 chr1 + 367907 368249 6 boyrabu.aAug10-unspliced // boyrabu // Transcript Identified by AceView // --- // --- boyrabu.aAug10-unspliced // Ace View // Transcript Identified by AceView // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main Coding boyrabu.aAug10-unspliced // Ace View
TC0100006447.hg.1 TC0100006447.hg.1 chr1 + 368427 368517 6 --- NONHSAT000071 // NONCODE // Non-coding transcript identified by NONCODE // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main NonCoding NONHSAT000071 // NONCODE
TC0100006448.hg.1 TC0100006448.hg.1 chr1 + 368994 375841 10 --- NONHSAT000069 // lncRNAWiki // Non-coding transcript identified by NONCODE // chr1 // 100 // 100 // 0 // --- // 0 /// NONHSAT000070 // lncRNAWiki // Non-coding transcript identified by NONCODE // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main NonCoding NONHSAT000069 // lncRNAWiki
TC0100006449.hg.1 TC0100006449.hg.1 chr1 + 378832 389626 10 --- NONHSAT000067 // lncRNAWiki // Non-coding transcript identified by NONCODE // chr1 // 100 // 100 // 0 // --- // 0 /// NONHSAT000067 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main NonCoding NONHSAT000067 // lncRNAWiki
TC0100006450.hg.1 TC0100006450.hg.1 chr1 + 439870 440232 10 ENST00000437905 // WBP1LP7 // WW domain binding protein 1-like pseudogene 7 [Source:HGNC Symbol;Acc:HGNC:43955] // --- // --- ENST00000437905 // ENSEMBL // WW domain binding protein 1-like pseudogene 7 [gene_biotype:processed_pseudogene transcript_biotype:processed_pseudogene] // chr1 // 100 // 100 // 0 // --- // 0 /// NONHSAT000066 // lncRNAWiki // Non-coding transcript identified by NONCODE // chr1 // 100 // 100 // 0 // --- // 0 /// NONHSAT000066 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 100 // 100 // 0 // --- // 0 /// OTTHUMT00000007998 // Havana transcript // WW domain binding protein 1-like (WBP1L) pseudogene[gene_biotype:processed_pseudogene transcript_biotype:processed_pseudogene] // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main Multiple_Complex ENST00000437905 // ENSEMBL
TC0100006451.hg.1 TC0100006451.hg.1 chr1 + 487101 489906 10 ENST00000432723 // CICP7 // capicua transcriptional repressor pseudogene 7 [Source:HGNC Symbol;Acc:HGNC:37756] // --- // --- ENST00000432723 // ENSEMBL // capicua transcriptional repressor pseudogene 7 [gene_biotype:processed_pseudogene transcript_biotype:processed_pseudogene] // chr1 // 100 // 100 // 0 // --- // 0 /// NONHSAT000062 // lncRNAWiki // Non-coding transcript identified by NONCODE // chr1 // 100 // 100 // 0 // --- // 0 /// NONHSAT000062 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 100 // 100 // 0 // --- // 0 /// OTTHUMT00000127609 // Havana transcript // capicua homolog (Drosophila) (CIC) pseudogene[gene_biotype:processed_pseudogene transcript_biotype:processed_pseudogene] // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main Multiple_Complex ENST00000432723 // ENSEMBL

Total number of rows: 138745

Table truncated, full table size 1046126 Kbytes.




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