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| Status |
Public on Jan 26, 2021 |
| Title |
Expression data in Abdominal Aortic Aneurysms |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
Current clinical practice for the assessment of abdominal aortic aneurysms (AAA) is based on vessel diameter and does not account for the multifactorial, heterogeneous remodeling that results in the regional weakening of the aortic wall leading to aortic growth and rupture. This study was conducted to determine correlation between a novel non-invasive surrogate measure of regional aortic weakening and the results from invasive analyses performed on corresponding ex vivo aortic samples. Tissue samples were evaluated to classify local wall weakening and likelihood of further degeneration based on non-invasive indices. A combined, image-based fluid dynamic and in-vivo strain analysis approach was used to estimate the Regional Aortic Weakness (RAW) index and assess individual aortas of AAA patients prior to elective surgery. Nine patients were treated with complete aortic resection allowing the systematic collection of tissue samples that were used to determine regional aortic mechanics, microstructure and gene expression by means of mechanical testing, microscopy and transcriptomic analyses. The RAW index was significantly higher for samples exhibiting lower mechanical strength (p = 0.035) and samples classified with low elastin content (p = 0.020). Samples with higher RAW index had the greatest number of genes differentially expressed compared to any constitutive metric. High RAW samples showed a decrease in gene expression for elastin and a down-regulation of pathways responsible for cell movement, reorganization of cytoskeleton, and angiogenesis.
Please note that the sample 'characteristisc: strain' represents the in-vivo strain corresponding to each section of aorta, which is measured from dynamic CT images of patient AAA using a proprietary software.
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| Overall design |
Samples were taken from different sections of AAA's during open repair surgeries. After surgery RNA was extracted and hybridized with Affymetrix arrays. We sought to validatea novel AAA stability index, the Relative Aortic Weakening (RAW), and therefore samples chosen for microarray analysis were characterized by either a high or a low RAW.
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| Contributor(s) |
Forneris A, Kennard J, Ismaguilova A, Shepherd RD, Studer D, Bromley A, Moore R, Di Martino ES, Rinker KD |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Jan 25, 2021 |
| Last update date |
Feb 03, 2021 |
| Contact name |
Jacob Kennard |
| Organization name |
University of Calgary
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| Department |
Chemical Engineering
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| Lab |
Kristina Rinker
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| Street address |
2500 university drive
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| City |
Calgary |
| State/province |
CA-AB |
| ZIP/Postal code |
T2N 1N4 |
| Country |
Canada |
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| Platforms (1) |
| GPL23126 |
[Clariom_D_Human] Affymetrix Human Clariom D Assay [transcript (gene) version] |
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| Samples (10)
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| Relations |
| BioProject |
PRJNA694659 |
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