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| Status |
Public on Aug 05, 2021 |
| Title |
Gene expression of two Ewing sarcoma cell lines (SK-N-MC, RDES), transfected with inducible shControl or two different shRNA against PRC1 |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
This dataset comprises trnscriptome data of two Ewing sarcoma cell lines (SK-N-MC and RDES) after knockdown of the gene PRC1
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| Overall design |
12 samples were normalized (log2) with Affymetrix Expression Console Software (v1.4) using SST-RMA algorithm. Gene expression data were annotated at gene level with the Affymetrix library for Clariom D arrays (human).
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| Contributor(s) |
Li J, Orth MF, Grünewald TG |
| Citation(s) |
34531368 |
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| Submission date |
Aug 20, 2020 |
| Last update date |
Oct 13, 2021 |
| Contact name |
Thomas Georg Philipp Grunewald |
| E-mail(s) |
[email protected]
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| Phone |
0049-6221-423718
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| Organization name |
German Cancer Research Center (DKFZ)
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| Department |
Division of Translational Pediatric Sarcoma Research
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| Street address |
Im Neuenheimer Feld 280
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| City |
Heidelberg |
| ZIP/Postal code |
69120 |
| Country |
Germany |
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| Platforms (1) |
| GPL23126 |
[Clariom_D_Human] Affymetrix Human Clariom D Assay [transcript (gene) version] |
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| Samples (12)
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| GSM4733566 |
SK-N-MC_shControl_dox-, 1 biologial Rep, 60h |
| GSM4733567 |
SK-N-MC_shControl_dox+, 1 biologial Rep, 60h |
| GSM4733568 |
SK-N-MC_shPRC1_cds_dox-, 1 biologial Rep, 60h |
| GSM4733569 |
SK-N-MC_shPRC1_cds_dox+, 1 biologial Rep, 60h |
| GSM4733570 |
SK-N-MC_shPRC1_utr_dox-, 1 biologial Rep, 60h |
| GSM4733571 |
SK-N-MC_shPRC1_utr_dox+, 1 biologial Rep, 60h |
| GSM4733572 |
RDES_shControl_dox-, 1 biologial Rep, 60h |
| GSM4733573 |
RDES_shControl_dox+, 1 biologial Rep, 60h |
| GSM4733574 |
RDES_shPRC1_cds_dox-, 1 biologial Rep, 60h |
| GSM4733575 |
RDES_shPRC1_cds_dox+, 1 biologial Rep, 60h |
| GSM4733576 |
RDES_shPRC1_utr_dox-, 1 biologial Rep, 60h |
| GSM4733577 |
RDES_shPRC1_utr_dox+, 1 biologial Rep, 60h |
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| Relations |
| BioProject |
PRJNA658340 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE156559_RAW.tar |
303.5 Mb |
(http)(custom) |
TAR (of CEL) |
| Processed data included within Sample table |
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