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| Status |
Public on Aug 03, 2021 |
| Title |
Gene expression of two Ewing sarcoma cell lines (A-673, ES7), transduced with inducible shControl or two different shRNA against RRM2 |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
This dataset comprises transcriptome data of two Ewing sarcoma cell lines (A-673 and ES7) after knockdown of the gene RRM2
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| Overall design |
12 samples were normalized (log2) with Affymetrix Expression Console Software (v1.4) using SST-RMA algorithm. Gene expression data were annotated at gene level with the Affymetrix library for Clariom D arrays (human).
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| Contributor(s) |
Ohmura S, Grünewald TG |
| Citation(s) |
34315482 |
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| Submission date |
Feb 09, 2021 |
| Last update date |
Aug 04, 2021 |
| Contact name |
Thomas Georg Philipp Grunewald |
| E-mail(s) |
[email protected]
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| Phone |
0049-6221-423718
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| Organization name |
German Cancer Research Center (DKFZ)
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| Department |
Division of Translational Pediatric Sarcoma Research
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| Street address |
Im Neuenheimer Feld 280
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| City |
Heidelberg |
| ZIP/Postal code |
69120 |
| Country |
Germany |
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| Platforms (1) |
| GPL23126 |
[Clariom_D_Human] Affymetrix Human Clariom D Assay [transcript (gene) version] |
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| Samples (12)
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| GSM5070813 |
A-673/TR/shR2_1#10_Dox (-), 1 biological Rep, 72h |
| GSM5070814 |
A-673/TR/shR2_1#10_Dox (+), 1 biological Rep, 72h |
| GSM5070815 |
A-673/TR/shR2_3#7_Dox (-), 1 biological Rep, 72h |
| GSM5070816 |
A-673/TR/shR2_3#7_Dox (+), 1 biological Rep, 72h |
| GSM5070817 |
A-673/TR/shControl_Dox (-), 1 biological Rep, 72h |
| GSM5070818 |
A-673/TR/shControl_Dox (+), 1 biological Rep, 72h |
| GSM5070819 |
ES7/TR/shR2_1#1_Dox (-), 1 biological Rep, 96h |
| GSM5070820 |
ES7/TR/shR2_1#1_Dox (+), 1 biological Rep, 96h |
| GSM5070821 |
ES7/TR/shR2_3#13_Dox (-), 1 biological Rep, 96h |
| GSM5070822 |
ES7/TR/shR2_3#13_Dox (+), 1 biological Rep, 96h |
| GSM5070823 |
ES7/TR/shControl_Dox (-), 1 biological Rep, 96h |
| GSM5070824 |
ES7/TR/shControl_Dox (+), 1 biological Rep, 96h |
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| Relations |
| BioProject |
PRJNA700851 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE166415_RAW.tar |
305.8 Mb |
(http)(custom) |
TAR (of CEL) |
| GSE166415_RMA_signal_intensities.txt.gz |
1.2 Mb |
(ftp)(http) |
TXT |
| Processed data are available on Series record |
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