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Sample GSM3172791 Query DataSets for GSM3172791
Status Public on Dec 31, 2018
Title normal colon, replicate 2
Sample type RNA
 
Source name normal colon tissue
Organism Homo sapiens
Characteristics disease: normal
Treatment protocol no treatment
Growth protocol no culture
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Affymetrix WT plus kit
 
Hybridization protocol Clariom D array
Scan protocol Affymetrix Model 450 Fluidics Station and Affymetrix Model 3000 7G
Description Gene expression data from normal colon tissue
Data processing Expression Console software (Affymetrix)
 
Submission date Jun 04, 2018
Last update date Dec 31, 2018
Contact name bin zhang
E-mail(s) [email protected]
Phone (65)96100417
Organization name National University of Singapore
Department Cancer Science Institute of Singapore
Street address 14 Medical Drive, #12-01
City Singapore
ZIP/Postal code 117599
Country Singapore
 
Platform ID GPL23126
Series (1)
GSE115261 Expression data of colon adenocarcinoma and normal colon

Data table header descriptions
ID_REF
VALUE log2-sst-rma-gene-full

Data table
ID_REF VALUE
AFFX-BkGr-GC03_st 9.90379
AFFX-BkGr-GC04_st 8.38742
AFFX-BkGr-GC05_st 6.83506
AFFX-BkGr-GC06_st 6.13883
AFFX-BkGr-GC07_st 5.14462
AFFX-BkGr-GC08_st 4.42852
AFFX-BkGr-GC09_st 3.89724
AFFX-BkGr-GC10_st 3.63157
AFFX-BkGr-GC11_st 3.38434
AFFX-BkGr-GC12_st 3.12669
AFFX-BkGr-GC13_st 2.81062
AFFX-BkGr-GC14_st 2.61507
AFFX-BkGr-GC15_st 2.5049
AFFX-BkGr-GC16_st 2.56535
AFFX-BkGr-GC17_st 2.50431
AFFX-BkGr-GC18_st 2.61794
AFFX-BkGr-GC19_st 2.75799
AFFX-BkGr-GC20_st 2.77558
AFFX-BkGr-GC21_st 2.87142
AFFX-BkGr-GC22_st 3.30937

Total number of rows: 138745

Table truncated, full table size 3533 Kbytes.




Supplementary file Size Download File type/resource
GSM3172791_N2_Clariom_D_Human_.CEL.gz 23.3 Mb (ftp)(http) CEL
GSM3172791_N2_Clariom_D_Human_.sst-rma-gene-full.chp.gz 888.8 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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