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Sample GSM2990625 Query DataSets for GSM2990625
Status Public on Feb 10, 2018
Title Children with Systemic Lupus Erythematosus rep4
Sample type RNA
 
Source name Children with Systemic Lupus Erythematosus
Organism Homo sapiens
Characteristics disease: Systemic Lupus Erythematosus
tissue: Peripheral blood
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label total RNA
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Transcriptome Array 2.0 were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000 7G.
Description Gene expression data from Children with Systemic Lupus Erythematosus
Data processing The data were analyzed with RMA using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100
 
Submission date Feb 09, 2018
Last update date Feb 10, 2018
Contact name shipeng Li
E-mail(s) [email protected]
Phone 13311046526
Organization name Beijing children's hospital
Street address Nan Li Shi Road No. 56,Beijing
City beijng
ZIP/Postal code 100045
Country China
 
Platform ID GPL23126
Series (1)
GSE110396 Expression Profile of Noncoding RNAs and mRNA in Children with Systemic Lupus Erythematosus

Data table header descriptions
ID_REF
VALUE Values presented are log2 RMA signal intensity.

Data table
ID_REF VALUE
AFFX-BkGr-GC03_st 6.682021
AFFX-BkGr-GC04_st 5.501442
AFFX-BkGr-GC05_st 5.499093
AFFX-BkGr-GC06_st 4.925739
AFFX-BkGr-GC07_st 4.646427
AFFX-BkGr-GC08_st 4.104478
AFFX-BkGr-GC09_st 3.752048
AFFX-BkGr-GC10_st 3.436008
AFFX-BkGr-GC11_st 3.250712
AFFX-BkGr-GC12_st 3.135724
AFFX-BkGr-GC13_st 2.921374
AFFX-BkGr-GC14_st 2.800203
AFFX-BkGr-GC15_st 2.593338
AFFX-BkGr-GC16_st 2.669676
AFFX-BkGr-GC17_st 2.62282
AFFX-BkGr-GC18_st 2.713083
AFFX-BkGr-GC19_st 2.845361
AFFX-BkGr-GC20_st 2.793053
AFFX-BkGr-GC21_st 2.864664
AFFX-BkGr-GC22_st 3.025454

Total number of rows: 138745

Table truncated, full table size 3669 Kbytes.




Supplementary file Size Download File type/resource
GSM2990625_S4_Clariom_D_Human_.CEL.gz 19.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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