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Status
Public on Oct 14, 2011
Title
Agilent-028282 Whole Rat Genome Microarray 4x44K v3 (Probe Name version)
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Rattus norvegicus Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Whole Rat Genome Microarray 4x44K v3
Submission date
Oct 14, 2011
Last update date
Dec 21, 2016
Organization
Agilent Technologies
E-mail(s)
[email protected] Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (842)
GSM819058 , GSM819059 , GSM819060 , GSM819061 , GSM819062 , GSM819063
GSM819064 ,
GSM819065 ,
GSM819066 ,
GSM819067 ,
GSM819068 ,
GSM819069 ,
GSM819070 ,
GSM819071 ,
GSM819072 ,
GSM819073 ,
GSM819074 ,
GSM819075 ,
GSM819076 ,
GSM950599 ,
GSM950600 ,
GSM950716 ,
GSM950717 ,
GSM950718 ,
GSM950719 ,
GSM950770 ,
GSM950865 ,
GSM950940 ,
GSM950947 ,
GSM951034 ,
GSM951035 ,
GSM1081149 ,
GSM1081150 ,
GSM1081151 ,
GSM1081152 ,
GSM1081153 ,
GSM1081154 ,
GSM1081155 ,
GSM1081156 ,
GSM1081157 ,
GSM1151627 ,
GSM1151628 ,
GSM1151629 ,
GSM1151630 ,
GSM1151631 ,
GSM1151632 ,
GSM1151633 ,
GSM1151634 ,
GSM1151635 ,
GSM1151636 ,
GSM1151637 ,
GSM1151638 ,
GSM1151639 ,
GSM1151640 ,
GSM1151641 ,
GSM1151642 ,
GSM1151643 ,
GSM1151644 ,
GSM1151645 ,
GSM1151646 ,
GSM1151647 ,
GSM1151648 ,
GSM1151649 ,
GSM1151650 ,
GSM1151651 ,
GSM1151652 ,
GSM1151653 ,
GSM1151654 ,
GSM1151655 ,
GSM1151656 ,
GSM1151657 ,
GSM1151658 ,
GSM1174156 ,
GSM1174157 ,
GSM1174158 ,
GSM1175332 ,
GSM1175333 ,
GSM1175334 ,
GSM1175335 ,
GSM1175336 ,
GSM1175337 ,
GSM1175338 ,
GSM1175339 ,
GSM1175340 ,
GSM1175341 ,
GSM1175342 ,
GSM1175343 ,
GSM1175344 ,
GSM1175345 ,
GSM1175346 ,
GSM1175347 ,
GSM1175348 ,
GSM1175349 ,
GSM1175350 ,
GSM1175351 ,
GSM1175352 ,
GSM1175353 ,
GSM1193447 ,
GSM1193448 ,
GSM1193449 ,
GSM1193450 ,
GSM1193451 ,
GSM1193452 ,
GSM1193453 ,
GSM1193454 ,
GSM1193455 ,
GSM1193456 ,
GSM1193457 ,
GSM1193458 ,
GSM1200243 ,
GSM1200244 ,
GSM1200245 ,
GSM1200246 ,
GSM1239145 ,
GSM1239146 ,
GSM1239147 ,
GSM1239148 ,
GSM1239149 ,
GSM1239150 ,
GSM1239151 ,
GSM1239152 ,
GSM1239153 ,
GSM1239154 ,
GSM1239155 ,
GSM1239156 ,
GSM1239157 ,
GSM1239158 ,
GSM1239159 ,
GSM1239160 ,
GSM1239161 ,
GSM1239162 ,
GSM1239163 ,
GSM1239164 ,
GSM1239165 ,
GSM1239166 ,
GSM1257055 ,
GSM1257056 ,
GSM1257057 ,
GSM1257058 ,
GSM1257059 ,
GSM1257060 ,
GSM1257061 ,
GSM1257062 ,
GSM1257063 ,
GSM1306223 ,
GSM1306224 ,
GSM1306225 ,
GSM1306226 ,
GSM1306227 ,
GSM1306228 ,
GSM1306229 ,
GSM1306230 ,
GSM1306231 ,
GSM1306232 ,
GSM1306233 ,
GSM1306234 ,
GSM1441400 ,
GSM1441401 ,
GSM1441402 ,
GSM1441403 ,
GSM1441404 ,
GSM1441405 ,
GSM1441406 ,
GSM1441407 ,
GSM1441408 ,
GSM1441409 ,
GSM1441410 ,
GSM1441411 ,
GSM1441412 ,
GSM1441413 ,
GSM1441414 ,
GSM1441415 ,
GSM1465269 ,
GSM1465270 ,
GSM1465271 ,
GSM1465272 ,
GSM1465273 ,
GSM1465274 ,
GSM1465275 ,
GSM1465276 ,
GSM1465277 ,
GSM1465278 ,
GSM1465279 ,
GSM1465280 ,
GSM1465281 ,
GSM1465282 ,
GSM1465283 ,
GSM1465284 ,
GSM1465285 ,
GSM1465286 ,
GSM1465287 ,
GSM1465288 ,
GSM1465289 ,
GSM1465290 ,
GSM1465291 ,
GSM1465292 ,
GSM1518801 ,
GSM1518802 ,
GSM1518803 ,
GSM1591167 ,
GSM1591168 ,
GSM1591169 ,
GSM1591170 ,
GSM1591171 ,
GSM1591172 ,
GSM1591173 ,
GSM1591174 ,
GSM1591175 ,
GSM1591176 ,
GSM1591177 ,
GSM1591178 ,
GSM1607979 ,
GSM1607980 ,
GSM1607981 ,
GSM1607982 ,
GSM1607983 ,
GSM1607984 ,
GSM1607985 ,
GSM1607986 ,
GSM1607987 ,
GSM1607988 ,
GSM1607989 ,
GSM1607990 ,
GSM1641208 ,
GSM1641209 ,
GSM1641210 ,
GSM1641211 ,
GSM1641212 ,
GSM1641213 ,
GSM1641214 ,
GSM1641215 ,
GSM1643569 ,
GSM1643570 ,
GSM1643571 ,
GSM1643572 ,
GSM1643573 ,
GSM1643574 ,
GSM1643575 ,
GSM1643576 ,
GSM1643577 ,
GSM1643578 ,
GSM1643579 ,
GSM1643580 ,
GSM1643581 ,
GSM1643582 ,
GSM1892409 ,
GSM1892410 ,
GSM1892411 ,
GSM1931772 ,
GSM1931773 ,
GSM1931774 ,
GSM1931775 ,
GSM1948748 ,
GSM1948749 ,
GSM1948750 ,
GSM1948751 ,
GSM1948752 ,
GSM1948753 ,
GSM2050930 ,
GSM2050931 ,
GSM2050932 ,
GSM2050933 ,
GSM2050934 ,
GSM2050935 ,
GSM2050936 ,
GSM2050937 ,
GSM2050938 ,
GSM2050939 ,
GSM2050940 ,
GSM2050941 ,
GSM2050942 ,
GSM2050943 ,
GSM2050944 ,
GSM2050945 ,
GSM2050946 ,
GSM2050947 ,
GSM2050948 ,
GSM2050949 ,
GSM2050950 ,
GSM2050951 ,
GSM2050952 ,
GSM2050953 ,
GSM2132047 ,
GSM2132048 ,
GSM2132049 ,
GSM2132050 ,
GSM2132051 ,
GSM2132052 ,
GSM2132053 ,
GSM2132054 ,
GSM2132055 ,
GSM2132056 ,
GSM2132057 ,
GSM2132058 ,
GSM2132134 ,
GSM2132135 ,
GSM2132136 ,
GSM2132137 ,
GSM2132138 ,
GSM2132139 ,
GSM2132140 ,
GSM2132141 ,
GSM2132142 ,
GSM2132143 ,
GSM2132144 ,
GSM2132145 ,
GSM2132146 ,
GSM2132147 ,
GSM2132148 ,
GSM2132149 ,
GSM2132150 ,
GSM2132151 ,
GSM2132152 ,
GSM2132153 ,
GSM2132154 ,
GSM2132155 ,
GSM2132156 ,
GSM2132157 ,
GSM2165905 ,
GSM2165906 ,
GSM2165907 ,
GSM2165908 ,
GSM2165909 ,
GSM2165910 ,
GSM2165911 ,
GSM2165912 ,
GSM2165913 ,
GSM2165914 ,
GSM2165915 ,
GSM2165916 ,
GSM2165917 ,
GSM2165918 ,
GSM2165919 ,
GSM2165920 ,
GSM2230868 ,
GSM2230869 ,
GSM2230870 ,
GSM2230871 ,
GSM2230872 ,
GSM2230873 ,
GSM2230874 ,
GSM2230875 ,
GSM2230876 ,
GSM2230877 ,
GSM2230878 ,
GSM2230879 ,
GSM2230880 ,
GSM2230881 ,
GSM2230882 ,
GSM2230883 ,
GSM2230884 ,
GSM2230885 ,
GSM2230886 ,
GSM2230887 ,
GSM2230888 ,
GSM2230889 ,
GSM2230890 ,
GSM2230891 ,
GSM2230892 ,
GSM2230893 ,
GSM2230894 ,
GSM2230895 ,
GSM2230896 ,
GSM2230897 ,
GSM2230898 ,
GSM2230899 ,
GSM2230900 ,
GSM2230901 ,
GSM2230902 ,
GSM2230903 ,
GSM2230904 ,
GSM2230905 ,
GSM2230906 ,
GSM2230907 ,
GSM2230908 ,
GSM2230909 ,
GSM2230910 ,
GSM2230911 ,
GSM2230912 ,
GSM2230913 ,
GSM2230914 ,
GSM2230915 ,
GSM2230916 ,
GSM2230917 ,
GSM2230918 ,
GSM2230919 ,
GSM2230920 ,
GSM2230921 ,
GSM2230922 ,
GSM2241435 ,
GSM2241436 ,
GSM2241437 ,
GSM2241438 ,
GSM2241439 ,
GSM2241440 ,
GSM2241441 ,
GSM2241442 ,
GSM2241443 ,
GSM2241444 ,
GSM2241445 ,
GSM2241446 ,
GSM2319644 ,
GSM2319645 ,
GSM2319646 ,
GSM2319647 ,
GSM2319648 ,
GSM2319649 ,
GSM2319650 ,
GSM2319651 ,
GSM2319652 ,
GSM2319653 ,
GSM2319654 ,
GSM2319655 ,
GSM2319656 ,
GSM2319657 ,
GSM2324273 ,
GSM2324274 ,
GSM2324275 ,
GSM2324276 ,
GSM2324277 ,
GSM2324278 ,
GSM2428101 ,
GSM2428102 ,
GSM2428103 ,
GSM2428104 ,
GSM2428105 ,
GSM2428106 ,
GSM2428107 ,
GSM2428108 ,
GSM2428109 ,
GSM2428110 ,
GSM2428111 ,
GSM2428112 ,
GSM2428113 ,
GSM2428114 ,
GSM2428115 ,
GSM2435406 ,
GSM2435407 ,
GSM2435408 ,
GSM2435412 ,
GSM2435413 ,
GSM2435414 ,
GSM2435421 ,
GSM2435422 ,
GSM2435423 ,
GSM2550480 ,
GSM2550481 ,
GSM2550482 ,
GSM2550483 ,
GSM2550484 ,
GSM2685201 ,
GSM2685202 ,
GSM2685203 ,
GSM2685204 ,
GSM2685205 ,
GSM2685206 ,
GSM2685207 ,
GSM2685208 ,
GSM2685209 ,
GSM2685210 ,
GSM2685211 ,
GSM2685212 ,
GSM2685213 ,
GSM2685214 ,
GSM2685215 ,
GSM2685216 ,
GSM2685217 ,
GSM2685218 ,
GSM2685219 ,
GSM2685220 ,
GSM2685221 ,
GSM2685222 ,
GSM2685223 ,
GSM2685224 ,
GSM2871723 ,
GSM2871724 ,
GSM2871725 ,
GSM2947335 ,
GSM2947336 ,
GSM2947337 ,
GSM2947338 ,
GSM2947339 ,
GSM2947340 ,
GSM2947341 ,
GSM2947342 ,
GSM2947343 ,
GSM3029831 ,
GSM3029832 ,
GSM3029833 ,
GSM3029834 ,
GSM3029835 ,
GSM3029836 ,
GSM3029837 ,
GSM3029838 ,
GSM3029839 ,
GSM3029840 ,
GSM3029841 ,
GSM3029842 ,
GSM3350331 ,
GSM3350332 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (81)
GSE33005 Effects of corn oil gavage on gene expression profiles of thymus in Wistar Rats
GSE37619 Spalax gene expression profiling of muscle and brain under hypoxia
GSE44241 A short-term maternal separation in early neonate rats markedly increases intestinal permeability, induces bacterial translocation to systemic organs and impacts gene expression in the liver
GSE47529 Transcriptional network analysis reveals that AT1 and AT2 Angiotensin II receptors are both involved in the regulation of genes essential for glioma progression
GSE48279 Balloon injury-induced gene expression in common carotid arteries of wistar rat
GSE48342 Gene Expression Profiles in Engineered Cardiac Tissues Respond to Mechanical Loading and Inhibition of Tyrosine Kinase
GSE49080 Profiling of circadian genes expressed in the uterus endometrial stromal cells of pregnant rats as revealed by DNA microarray coupled with RNA interference
GSE49510 Global gene expression pattern difference between the high density and the regular density cultured rat bone marrow cells
GSE51125 Molecular characterization of 4-NQO induced F344 rat tongue carcinogenesis: alteration of multiple gene expression and hypomethylation of PTGS2 proximal promoter
GSE52001 Effects of Salidroside on gene expression in ischemic brain of rats
GSE54037 In vitro ischemia triggers a transcriptional response to down-regulate synaptic proteins in hippocampal neurons.
GSE59645 Gene expression of whole hippocampus 24hr post-injury in rat
GSE59647 Drug effects on hippocampal microRNA profiles after traumatic brain injury
GSE60118 Inhalation exposure of hexanal in rats (mRNA)
GSE60205 Inhalation exposure of hexanal in rats
GSE62041 Characterization of changes in global genes expression in the distal colon of loperamide-induced constipation SD rats in response to the laxative effects of Liriope platyphylla
GSE65265 Macrophage gene expression associated with remodeling of the prepartum rat cervix: Microarray and pathway analyses
GSE65862 Transcriptomic response in colon of rat with increased dietary protein content
GSE67175 SAHA Rat Dental Pulp
GSE67274 Impact of Vitamine D depletion and repletion on rat skeletal muscle
GSE73387 Alteration of Gene Expression Profile in Spontaneously Hypertensive Rats Treated with Protein Hydrolysate of Blue Mussel (Mytilus edulis) by DNA Microarray Analysis
GSE74755 mRNA expression profile in vascular smooth muscle cells (VSMCs) after inducing calcification
GSE75280 Azoxymethane-induced colorectal tumorigenesis in hypertensive rat models
GSE77377 Comparison of gene expression profiles of wildtype and two lines of Nrf2 knockout rat livers with or without CDDO-Im treatment
GSE80638 Alteration of gene expression profile of cerebelllar neuron-enriched cultures from neonatal rats by nicotine, acetamiprid, or imidacloprid treatment [nicotine]
GSE80652 Alteration of gene expression profile of cerebelllar neuron-enriched cultures from neonatal rats by nicotine, acetamiprid, or imidacloprid treatment [acetamiprid]
GSE80653 Alteration of gene expression profile of cerebelllar neuron-enriched cultures from neonatal rats by nicotine, acetamiprid, or imidacloprid treatment [imidacloprid]
GSE80656 Alteration of gene expression profile of cerebelllar neuron-enriched cultures from neonatal rats by nicotine, acetamiprid, or imidacloprid treatment
GSE81657 Rat Primary Cultured Hepatocytes: Control vs SQ1 or Pravastatin treatment.
GSE81659 Expression data from squalestatin 1- or pravastatin-treated primary cultured mouse and rat hepatocytes.
GSE84289 Temporal analysis of hippocampal gene co-expression networks in the hyperthermia model of febrile seizures
GSE84524 Effect of a salt restriction diet on cardiac damage in a rat model of metabolic syndrome
GSE87045 Sex hormone responsive genes in rat choroid plexus
GSE87188 Gene Expression Profiling in the Hippocampus of Orchidectomized Rats
GSE92363 AAV-mediated RNAi of traumatic brain injury-induced genes in the rat hippocampus
GSE92691 Comparative analysis of 1-methyl-4-phenylpyridinium (MPP+) and manganese induced neurotoxic effects on DNA methylation in dopaminergic neurons
GSE97040 The role of Tmub1 protein in the regulation of hepatic cell transcription
GSE100499 Exploring acupuncture mechanism in preconditioning of IRI
GSE107587 RNA expression profiling in cardiomyocytes
GSE109622 Comparison of the transcriptomes of immortalized Hertwig’s epithelial root sheath (HERS) cell line HERS-H1 and HERS-C2
GSE111384 Synaptic scaling regulates the transcriptome in hippocampal neurons
GSE118892 Screening of Genes Related to Glucose and Lipid Metabolism in Non-alcoholic Fatty Liver Disease by Gene Microarray
GSE119235 Aberrant DNA methylation of hypothalamic angiotensin receptor in prenatal-programmed hypertension
GSE126062 Expression data from healthy and diastolic heart failure rats
GSE128167 Different Gene Expression Profile in Spontaneously Hypertensive Rats Treated with Songling Xuemaikang Capsule
GSE128618 Activation of β-adrenoceptor signaling inhibits extracellular matrix deposition of human bladder smooth muscle cells
GSE129051 Identifying circRNA-associated-ceRNA networks in the hippocampus of Aß1-42-induced Alzheimer's disease-like rats using microarray analysis (mRNA)
GSE129055 Identifying circRNA-associated-ceRNA networks in the hippocampus of Aß1-42-induced Alzheimer's disease-like rats using microarray analysis
GSE129561 Differential gene expressions for androgen-induced benign prostatic hyperplysia rat underwent oral treatment of metabolic peptide ghrelin
GSE130481 Bcl-2 overexpression effects in rat neural precursor cells.
GSE135931 Effect of dioxin on hypothalamic mRNAs in maternal rats at postpartum day 7
GSE135932 Effect of dioxin on pituitary mRNAs in maternal rats at postpartum day 7
GSE135933 Effect of dioxin on maternal rats at postpartum day 7
GSE136575 Gene expression in the livers of rats with no infection and at 2 and 4 weeks after Clonorchis sinensis infection
GSE137838 Altered mRNA expression of cultured dorsal root ganglia neurons at different times of rat
GSE137839 Altered miRNA and mRNA expression of cultured dorsal root ganglia neurons at different times of rat
GSE138694 Effect of maternal dioxin exposure on pituitary mRNAs in fetal rats at gestational day 18
GSE141166 Downstream targets of uc.323-mediated cardiomyocyte hypertrophy
GSE141234 Altered expression and Downstream targets of uc.323
GSE141819 MiRNA-mRNA expression profiles and functional network after injection of botulinum toxin type A into submandibular gland [microarray]
GSE141824 MiRNA-mRNA expression profiles and functional network after injection of botulinum toxin type A into submandibular gland
GSE146299 Gamma aminobutyric acid increases erythropoietin overexpression of hypoxia inducible factors in rats
GSE147732 Gene expression profiling of sciatic nerves from rats with diabetic peripheral neuropathy
GSE147774 Identification of circRNA and mRNA expression profiles and functional networks of vascular tissue in lipopolysaccharide-induced rat septic shock model [mRNA]
GSE147775 Identification of circRNA and mRNA expression profiles and functional networks of vascular tissue in lipopolysaccharide-induced rat septic shock model
GSE148420 Immunohistochemical Investigation for Renal Tubules in Adaptive and Maladaptive Repair Process after Renal Tubular Injury in the Kidney of Rats
GSE148752 Analyses of circRNAs and mRNAs profiling in the submandibular gland in hypertension [mRNA]
GSE148754 Analyses of circRNAs and mRNAs profiling in the submandibular gland in hypertension
GSE156908 Reducing NADPH synthesis counteracts diabetic nephropathy through restoration of AMPK activity
GSE158251 Transcript changes in primary Leydig cells treated with Sertoli cell released exosomes
GSE188348 Transcriptomic response in the heart and kidney to different types of antihypertensive drug administration [heart]
GSE188350 Transcriptomic response in the heart and kidney to different types of antihypertensive drug administration
GSE198021 The effect of Bailing Capsule on gene expression in rat kidney
GSE214034 Development of gene expression signatures for lnc-URIDS knock down rat dermal fibroblast
GSE214358 Gene expression profiles of renal tubules in the kidney of fibrosis model rat produced by allopurinol.
GSE229753 Transcriptomic analysis reveals distinct adaptive molecular mechanism in the hippocampal CA3 from rats susceptible or not-susceptible to hyperthermia-induced seizures
GSE229754 Transcriptomic analysis reveals distinct adaptive molecular mechanism in the hippocampal CA3 from rats susceptible or not-susceptible to hyperthermia-induced seizures
GSE229757 Transcriptomic analysis reveals distinct adaptive molecular mechanism in the hippocampal CA3 from rats susceptible or not-susceptible to hyperthermia-induced seizures
GSE229758 Transcriptomic analysis reveals distinct adaptive molecular mechanism in the hippocampal CA3 from rats susceptible or not-susceptible to hyperthermia-induced seizures
GSE229760 Transcriptomic analysis reveals distinct adaptive molecular mechanism in the hippocampal CA3 from rats susceptible or not-susceptible to hyperthermia-induced seizures
GSE246257 Identification of gene expression signatures and related microRNAs for chronic glomerulonephritis based on microarray and bioinformatic analysis
Data table header descriptions ID Agilent probe name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
Data table ID SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE A_42_P453055
A_42_P453055
FALSE
NM_031752
NM_031752
78958
Bcam
basal cell adhesion molecule
Rn.7003
ENSRNOT00000045574
ref|NM_031752|ens|ENSRNOT00000045574|gb|AB035510|gb|BC072479
chr1:79069491-79069432
rn|1q21
Rattus norvegicus basal cell adhesion molecule (Bcam), mRNA [NM_031752]
GO:0004872(receptor activity)|GO:0005055(laminin receptor activity)|GO:0005886(plasma membrane)|GO:0007155(cell adhesion)|GO:0007160(cell-matrix adhesion)|GO:0007165(signal transduction)|GO:0009986(cell surface)|GO:0016021(integral to membrane)|GO:0043236(laminin binding)
TGGCAGTCAGCGTCGGTCTCTTGCTACTCGTAGTCGCTGCTTTCTACTGCATGAGACGCA
A_42_P453171
A_42_P453171
FALSE
NM_001107063
NM_001107063
303653
Cdc42ep4
CDC42 effector protein (Rho GTPase binding) 4
Rn.8595
ENSRNOT00000048264
ref|NM_001107063|ens|ENSRNOT00000048264|gb|BC161986|tc|TC614652
chr10:103366334-103366275
rn|10q32.1
Rattus norvegicus CDC42 effector protein (Rho GTPase binding) 4 (Cdc42ep4), mRNA [NM_001107063]
GO:0005737(cytoplasm)|GO:0007266(Rho protein signal transduction)|GO:0008360(regulation of cell shape)|GO:0015629(actin cytoskeleton)|GO:0015630(microtubule cytoskeleton)|GO:0031274(positive regulation of pseudopodium assembly)
TTTTTCTGAAATCTGTTTTGCTCGGCTCCTGTAACTCTACCCAGAACAAGGGTAGAGGCT
A_42_P453894
A_42_P453894
FALSE
NM_001108296
NM_001108296
360617
RGD1306682
similar to RIKEN cDNA 1810046J19
Rn.143893
ENSRNOT00000009485
ref|NM_001108296|ens|ENSRNOT00000009485|gb|FQ214212|tc|TC587562
chr10:87243261-87243202
rn|10q31
Rattus norvegicus similar to RIKEN cDNA 1810046J19 (RGD1306682), mRNA [NM_001108296]
GO:0008430(selenium binding)|GO:0045454(cell redox homeostasis)
CACAAAGAGGGATTAGACATTTCTATGGTCTAAGGAAGAAAAGAGATGTTCTCCGTGGAC
A_42_P453935
A_42_P453935
FALSE
NM_001198580
NM_001198580
288770
Naca
nascent polypeptide-associated complex alpha subunit
Rn.162909
ENSRNOT00000003550
ref|NM_001198580|ref|NM_001105939|ref|NM_001198562|ens|ENSRNOT00000003550
chr7:1341431-1341490
rn|7q11
Rattus norvegicus nascent polypeptide-associated complex alpha subunit (Naca), transcript variant 3, mRNA [NM_001198580]
TTACAGGGGTTACGAGAGTCACTATCCGGAAATCTAAAAATATCCTCTTTGTCATCACAA
A_42_P453959
A_42_P453959
FALSE
NM_001107833
NM_001107833
311866
Lrsam1
leucine rich repeat and sterile alpha motif containing 1
Rn.61607
ENSRNOT00000060186
ref|NM_001107833|ens|ENSRNOT00000060186|ens|ENSRNOT00000034151|tc|TC599544
chr3:11918584-11918525
rn|3p11
Rattus norvegicus leucine rich repeat and sterile alpha motif containing 1 (Lrsam1), mRNA [NM_001107833]
GO:0000209(protein polyubiquitination)|GO:0004842(ubiquitin-protein ligase activity)|GO:0005737(cytoplasm)|GO:0008270(zinc ion binding)|GO:0030163(protein catabolic process)|GO:0044425(membrane part)|GO:0045806(negative regulation of endocytosis)|GO:0046755(non-lytic virus budding)|GO:0046872(metal ion binding)|GO:0051865(protein autoubiquitination)|GO:0070086(ubiquitin-dependent endocytosis)
AACGAAGCAGGAAAATTACTGGCTCATCCAGTACCAACGGCTTTTGAACCAGAAGCCTTT
A_42_P453976
A_42_P453976
FALSE
XM_219476
XM_219476
309104
Ifitm6
interferon induced transmembrane protein 6
Rn.136568
ref|XM_219476|ref|XM_001061891|tc|TC646750
chr1:201204979-201204920
rn|1q41
PREDICTED: Rattus norvegicus interferon induced transmembrane protein 6 (Ifitm6), mRNA [XM_219476]
GO:0009607(response to biotic stimulus)|GO:0016021(integral to membrane)
CAGGGATAACAAGCCTATCCTATAGCCGACATAATTAGAACCTACTAGTTAGGTACTAAC
A_42_P454206
A_42_P454206
FALSE
NM_001173354
NM_001173354
315949
Armc8
armadillo repeat containing 8
Rn.8146
ref|NM_001173354|tc|TC585383
chr8:104342200-104342141
rn|8q31
Rattus norvegicus armadillo repeat containing 8 (Armc8), mRNA [NM_001173354]
GO:0005488(binding)
AACAGAACTTGGGTTTTATGCACATGTCAGAGTGCTAATGTGAGAAAATCTGGGAATGGA
A_42_P454301
A_42_P454301
FALSE
NM_001107166
NM_001107166
304670
Tnpo2
transportin 2
Rn.228319
ENSRNOT00000005571
ref|NM_001107166|ens|ENSRNOT00000005571|gb|BI276117|tc|TC588749
chr19:24755817-24755758
rn|19q11
Rattus norvegicus transportin 2 (Tnpo2), mRNA [NM_001107166]
GO:0005488(binding)|GO:0006886(intracellular protein transport)|GO:0008565(protein transporter activity)
TTTTATTACCATTACCCCATGGGCTCCCAGGTCTATCCATCTGTTACTGTGCTGTGCTGG
A_42_P454311
A_42_P454311
FALSE
NM_001037654
NM_001037654
363062
Dixdc1
DIX domain containing 1
Rn.8331
ENSRNOT00000039045
ref|NM_001037654|ens|ENSRNOT00000039045|gb|AY770507|tc|TC585766
chr8:54018279-54018220
rn|8q23
Rattus norvegicus DIX domain containing 1 (Dixdc1), mRNA [NM_001037654]
GO:0003779(actin binding)|GO:0004871(signal transducer activity)|GO:0005622(intracellular)|GO:0005737(cytoplasm)|GO:0005829(cytosol)|GO:0005925(focal adhesion)|GO:0005938(cell cortex)|GO:0007275(multicellular organismal development)|GO:0019904(protein domain specific binding)|GO:0021695(cerebellar cortex development)|GO:0030054(cell junction)|GO:0030900(forebrain development)|GO:0031435(mitogen-activated protein kinase kinase kinase binding)|GO:0043010(camera-type eye development)|GO:0043015(gamma-tubulin binding)|GO:0043025(neuronal cell body)|GO:0043234(protein complex)|GO:0043679(axon terminus)|GO:0046330(positive regulation of JNK cascade)|GO:0050772(positive regulation of axonogenesis)|GO:0060070(canonical Wnt receptor signaling pathway)|GO:0060071(Wnt receptor signaling pathway, planar cell polarity pathway)|GO:0090263(positive regulation of canonical Wnt receptor signaling pathway)
TCAAAGTAATAACGTGTTTTAACTGCCTATATGTACCAGAGTTGTGAACAAGTCAAAACC
A_42_P454378
A_42_P454378
FALSE
NM_019214
NM_019214
29440
Slc26a4
solute carrier family 26, member 4
Rn.11792
ENSRNOT00000010350
ref|NM_019214|ens|ENSRNOT00000010350|gb|AF167412|tc|TC574930
chr6:49395832-49394773
rn|6q16
Rattus norvegicus solute carrier family 26, member 4 (Slc26a4), mRNA [NM_019214]
GO:0005215(transporter activity)|GO:0006821(chloride transport)|GO:0006885(regulation of pH)|GO:0008271(secondary active sulfate transmembrane transporter activity)|GO:0008272(sulfate transport)|GO:0015108(chloride transmembrane transporter activity)|GO:0015111(iodide transmembrane transporter activity)|GO:0015698(inorganic anion transport)|GO:0015705(iodide transport)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016324(apical plasma membrane)|GO:0032880(regulation of protein localization)|GO:0055085(transmembrane transport)
ACTTTGCTTTGCTTCAAGACGATGTACTAGAAAAGATGGAGCAGTGTGGGTTCTTTGATG
A_42_P455785
A_42_P455785
FALSE
NM_080781
NM_080781
114023
Copb1
coatomer protein complex, subunit beta 1
Rn.4327
ENSRNOT00000016292
ref|NM_080781|ens|ENSRNOT00000016292|gb|X57228|gb|BC061882
chr1:172200815-172200007
rn|1q34
Rattus norvegicus coatomer protein complex, subunit beta 1 (Copb1), mRNA [NM_080781]
GO:0000139(Golgi membrane)|GO:0005198(structural molecule activity)|GO:0005515(protein binding)|GO:0005737(cytoplasm)|GO:0005783(endoplasmic reticulum)|GO:0005792(microsome)|GO:0005793(ER-Golgi intermediate compartment)|GO:0005794(Golgi apparatus)|GO:0005798(Golgi-associated vesicle)|GO:0005829(cytosol)|GO:0005886(plasma membrane)|GO:0006886(intracellular protein transport)|GO:0006890(retrograde vesicle-mediated transport, Golgi to ER)|GO:0006891(intra-Golgi vesicle-mediated transport)|GO:0016044(cellular membrane organization)|GO:0016192(vesicle-mediated transport)|GO:0030117(membrane coat)|GO:0030126(COPI vesicle coat)|GO:0030137(COPI-coated vesicle)|GO:0031410(cytoplasmic vesicle)|GO:0048205(COPI coating of Golgi vesicle)
TTCGTGCAAAAAGTCAGGGAATGGCCTTGAGCCTTGGAGATAAAATCAACCTGTCTCAAA
A_42_P455802
A_42_P455802
FALSE
NM_001013929
NM_001013929
297797
Atp6v1h
ATPase, H+ transporting, lysosomal V1 subunit H
Rn.21454
ENSRNOT00000043993
ref|NM_001013929|ens|ENSRNOT00000043993|ens|ENSRNOT00000065402|gb|BC083669
chr5:14603736-14603677
rn|5q12
Rattus norvegicus ATPase, H+ transporting, lysosomal V1 subunit H (Atp6v1h), mRNA [NM_001013929]
GO:0006897(endocytosis)
TGATCCACAAGTTTTAGCTGTTGCTGCTCATGATGTTGGAGAATATGTCCGGCATTATCC
A_42_P456080
A_42_P456080
FALSE
tc|TC595970
chr3:096121418-096121359
rn|3q33
CCTGGCTGCATGATGAAATTCAACTTGAATGCTAAATGATTCTTGGCACAATCCACTGTA
A_42_P456155
A_42_P456155
FALSE
NM_001126097
NM_001126097
690848
Uqcr11
ubiquinol-cytochrome c reductase, complex III subunit XI
Rn.3254
ENSRNOT00000022747
ref|NM_001126097|ens|ENSRNOT00000022747|gb|FQ217927|gb|BC157815
chr7:10820937-10820996
rn|7q11
Rattus norvegicus ubiquinol-cytochrome c reductase, complex III subunit XI (Uqcr11), nuclear gene encoding mitochondrial protein, mRNA [NM_001126097]
GO:0008121(ubiquinol-cytochrome-c reductase activity)|GO:0009055(electron carrier activity)
TCTCCCTTGAGGATTTCCCAGCTCAAGAATCCTTTGAGCTCCCAACACTTGCATGTCGGG
A_42_P456701
A_42_P456701
FALSE
NM_001009697
NM_001009697
315763
Mtfmt
mitochondrial methionyl-tRNA formyltransferase
Rn.34645
ENSRNOT00000019671
ref|NM_001009697|ens|ENSRNOT00000019671|gb|BC088470|gb|FQ226710
chr8:69701562-69701621
rn|8q24
Rattus norvegicus mitochondrial methionyl-tRNA formyltransferase (Mtfmt), nuclear gene encoding mitochondrial protein, mRNA [NM_001009697]
GO:0004479(methionyl-tRNA formyltransferase activity)|GO:0005739(mitochondrion)|GO:0008168(methyltransferase activity)|GO:0009058(biosynthetic process)|GO:0016740(transferase activity)
CCAGCAACTGCTGTGATTTTGAAAGAAGATGACAGCTTGGGAGAAAGAGAAAATGGTTAT
A_42_P457003
A_42_P457003
FALSE
NM_012802
NM_012802
25267
Pdgfra
platelet derived growth factor receptor, alpha polypeptide
Rn.55127
ENSRNOT00000003077
ref|NM_012802|ens|ENSRNOT00000003077|gb|M63837|gb|FQ222292
chr14:35369767-35369708
rn|14p11
Rattus norvegicus platelet derived growth factor receptor, alpha polypeptide (Pdgfra), mRNA [NM_012802]
GO:0000166(nucleotide binding)|GO:0001553(luteinization)|GO:0001701(in utero embryonic development)|GO:0004872(receptor activity)|GO:0005018(platelet-derived growth factor alpha-receptor activity)|GO:0005021(vascular endothelial growth factor receptor activity)|GO:0005161(platelet-derived growth factor receptor binding)|GO:0005524(ATP binding)|GO:0005575(cellular_component)|GO:0005634(nucleus)|GO:0005737(cytoplasm)|GO:0005886(plasma membrane)|GO:0005887(integral to plasma membrane)|GO:0008210(estrogen metabolic process)|GO:0008284(positive regulation of cell proliferation)|GO:0008585(female gonad development)|GO:0009653(anatomical structure morphogenesis)|GO:0009725(response to hormone stimulus)|GO:0009887(organ morphogenesis)|GO:0010033(response to organic substance)|GO:0010035(response to inorganic substance)|GO:0018108(peptidyl-tyrosine phosphorylation)|GO:0019838(growth factor binding)|GO:0023019(signal transduction involved in regulation of gene expression)|GO:0030198(extracellular matrix organization)|GO:0030324(lung development)|GO:0030325(adrenal gland development)|GO:0030335(positive regulation of cell migration)|GO:0030539(male genitalia development)|GO:0032355(response to estradiol stimulus)|GO:0033327(Leydig cell differentiation)|GO:0034097(response to cytokine stimulus)|GO:0035790(platelet-derived growth factor receptor-alpha signaling pathway)|GO:0042060(wound healing)|GO:0042063(gliogenesis)|GO:0042475(odontogenesis of dentine-containing tooth)|GO:0042803(protein homodimerization activity)|GO:0043548(phosphatidylinositol 3-kinase binding)|GO:0043627(response to estrogen stimulus)|GO:0045740(positive regulation of DNA replication)|GO:0046777(protein autophosphorylation)|GO:0046983(protein dimerization activity)|GO:0048008(platelet-derived growth factor receptor signaling pathway)|GO:0048010(vascular endothelial growth factor receptor signaling pathway)|GO:0048146(positive regulation of fibroblast proliferation)|GO:0048407(platelet-derived growth factor binding)|GO:0048705(skeletal system morphogenesis)|GO:0048839(inner ear development)|GO:0055003(cardiac myofibril assembly)|GO:0055093(response to hyperoxia)|GO:0060021(palate development)|GO:0060325(face morphogenesis)|GO:0061298(retina vasculature development in camera-type eye)|GO:0071230(cellular response to amino acid stimulus)|GO:0072277(metanephric glomerular capillary formation)
TATCTGTTGCTATGTAGACTTGGAGAATACTGCCAAAACGTGTATGACAAGCTGTATCAC
A_42_P457692
A_42_P457692
FALSE
NM_001008363
NM_001008363
360772
Zfand2a
zinc finger, AN1-type domain 2A
Rn.19157
ENSRNOT00000047634
ref|NM_001008363|ens|ENSRNOT00000047634|gb|BC085928|tc|TC574549
chr12:15672551-15672610
rn|12q11
Rattus norvegicus zinc finger, AN1-type domain 2A (Zfand2a), mRNA [NM_001008363]
GO:0005634(nucleus)|GO:0005737(cytoplasm)|GO:0008270(zinc ion binding)|GO:0046872(metal ion binding)
GGCCTCAGATTCTATCCCAACTATTGCAAGGAAACAGTCACCAGACTGAAGACAATATCA
A_42_P457773
A_42_P457773
FALSE
NM_001024998
NM_001024998
307180
Txndc15
thioredoxin domain containing 15
Rn.4142
ENSRNOT00000000146
ref|NM_001024998|ens|ENSRNOT00000000146|gb|BC091340|tc|TC612888
chr17:14938656-14938597
rn|17p14
Rattus norvegicus thioredoxin domain containing 15 (Txndc15), mRNA [NM_001024998]
GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0045454(cell redox homeostasis)
GCTAACGTGTGGACTTGCCACGGAAGTCAGGTTCAAGAATCATGTTCTTGTTGAACTACT
A_42_P457783
A_42_P457783
FALSE
NM_001025029
NM_001025029
364674
Tifab
TRAF-interacting protein with forkhead-associated domain, family member B
Rn.160910
ENSRNOT00000015878
ref|NM_001025029|ens|ENSRNOT00000015878|gb|BC091188|tc|TC578897
chr17:14412135-14412194
rn|17p14
Rattus norvegicus TRAF-interacting protein with forkhead-associated domain, family member B (Tifab), mRNA [NM_001025029]
GGCCCAGGGACGGAGAAGGGCCCTTCATGGCTCCAGGGAATGGGAACTTCATATACTTTT
A_42_P457895
A_42_P457895
FALSE
NM_001012462
NM_001012462
294385
Supv3l1
suppressor of var1, 3-like 1 (S. cerevisiae)
Rn.19830
ENSRNOT00000000441
ref|NM_001012462|ens|ENSRNOT00000000441|gb|BC089883|tc|TC575651
chr20:29684522-29684463
rn|20q11
Rattus norvegicus suppressor of var1, 3-like 1 (S. cerevisiae) (Supv3l1), mRNA [NM_001012462]
GO:0000166(nucleotide binding)|GO:0000958(mitochondrial mRNA catabolic process)|GO:0000962(positive regulation of mitochondrial RNA catabolic process)|GO:0000965(mitochondrial RNA 3'-end processing)|GO:0003677(DNA binding)|GO:0003678(DNA helicase activity)|GO:0003725(double-stranded RNA binding)|GO:0004004(ATP-dependent RNA helicase activity)|GO:0005524(ATP binding)|GO:0005634(nucleus)|GO:0005739(mitochondrion)|GO:0005759(mitochondrial matrix)|GO:0006310(DNA recombination)|GO:0006401(RNA catabolic process)|GO:0006916(anti-apoptosis)|GO:0016817(hydrolase activity, acting on acid anhydrides)|GO:0030307(positive regulation of cell growth)|GO:0032508(DNA duplex unwinding)|GO:0034458(3'-5' RNA helicase activity)|GO:0042645(mitochondrial nucleoid)|GO:0042803(protein homodimerization activity)|GO:0045025(mitochondrial degradosome)|GO:0070584(mitochondrion morphogenesis)|GO:0070827(chromatin maintenance)
TGGGCAGTACTTTGTCTGCAACATGGATGATTTTAAGTTCTCTGCAGAGCTGATCCAGCA
30424 16941 Kbytes .Supplementary data files not provided
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