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Series GSE21611 Query DataSets for GSE21611
Status Public on Sep 12, 2010
Title Oscillating gene expression determines competence for periodic branching in the Arabidopsis root
Organism Arabidopsis thaliana
Experiment type Expression profiling by array
Summary The Oscillation Zone (OZ) of unsynchronized roots was disected and divided into an upper (OZ2) and lower (OZ1) half .
Samples were ordered according to DR5:GUS expression as analyzed by real time PCR to find periodic expression patterns
 
Overall design Seedlings were grown for 5 days. 39 individual roots were dissected for RNA extraction. These microarray samples profile a specific region of the root tip designated as the Oscillation zone. Arrangement of the samples in the following order: OZ1-1, OZ1-4, OZ1-23, OZ1-14, OZ1-17, OZ1-2, OZ1-6, OZ1-13, OZ1-15, OZ1-16, OZ1-10, OZ1-32, OZ1-3, OZ1-31, OZ1-22, OZ1-35, OZ1-19, OZ1-9, OZ1-33, OZ1-20, OZ2-4, OZ2-23, OZ2-14, OZ2-6, OZ2-13, OZ2-15, OZ2-10, OZ2-32, OZ2-22, OZ2-35, OZ2-19, OZ2-9, OZ2-20, OZ2-36, OZ2-39, OZ2-21, OZ2-40, OZ2-38, OZ2-1, was used to identify periodic expression patterns.
 
Contributor(s) Moreno-Risueno MA, Benfey PN
Citation(s) 20829477
Submission date Apr 30, 2010
Last update date Aug 15, 2018
Contact name Miguel Angel Moreno-Risueno
E-mail(s) [email protected]
Phone 9196138203
Organization name Duke University
Department Biology
Lab Benfey
Street address 124 Science Dr
City Durham
State/province NC
ZIP/Postal code 27708
Country USA
 
Platforms (1)
GPL198 [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array
Samples (39)
GSM539452 At_PR_OZ1_1
GSM539453 At_PR_OZ1_2
GSM539454 At_PR_OZ1_3
Relations
Affiliated with GSE69995
BioProject PRJNA126985

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE21611_RAW.tar 126.4 Mb (http)(custom) TAR (of CEL, CHP, EXP)
Processed data included within Sample table
Processed data provided as supplementary file

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