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Sample GSM539478 Query DataSets for GSM539478
Status Public on Sep 12, 2010
Title At_PR_OZ2_14
Sample type RNA
 
Source name DR5-GUS
Organism Arabidopsis thaliana
Characteristics ecotype: Columbia
age: 5 days after germination
tissue: lower half of seedling root
growth media: Standard media for 5 days
periodic order: 23
Extracted molecule total RNA
Extraction protocol see Affymetrix standard protocols
Label biotin
Label protocol see Affymetrix standard protocols
 
Hybridization protocol see Affymetrix standard protocols
Scan protocol see Affymetrix standard protocols
Description Gene expression data the OZ2 (upper half) under standard conditions for 5 days
Data processing MAS 5.0
 
Submission date Apr 30, 2010
Last update date Aug 15, 2018
Contact name Miguel Angel Moreno-Risueno
E-mail(s) [email protected]
Phone 9196138203
Organization name Duke University
Department Biology
Lab Benfey
Street address 124 Science Dr
City Durham
State/province NC
ZIP/Postal code 27708
Country USA
 
Platform ID GPL198
Series (1)
GSE21611 Oscillating gene expression determines competence for periodic branching in the Arabidopsis root
Relations
Reanalyzed by GSE118579

Data table header descriptions
ID_REF
VALUE MAS 5.0 signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1130.87 P 0.000389797
AFFX-BioB-M_at 1544.34 P 4.42873e-05
AFFX-BioB-3_at 734.35 P 7.00668e-05
AFFX-BioC-5_at 3121.57 P 4.42873e-05
AFFX-BioC-3_at 2834.21 P 4.42873e-05
AFFX-BioDn-5_at 5581.24 P 4.42873e-05
AFFX-BioDn-3_at 9556.57 P 4.42873e-05
AFFX-CreX-5_at 26347.2 P 4.42873e-05
AFFX-CreX-3_at 45274.6 P 4.42873e-05
AFFX-DapX-5_at 17.6496 A 0.966335
AFFX-DapX-M_at 10.1567 A 0.979978
AFFX-DapX-3_at 83.7204 A 0.205732
AFFX-LysX-5_at 59.9384 A 0.382599
AFFX-LysX-M_at 15.2349 A 0.852061
AFFX-LysX-3_at 5.95843 A 0.876428
AFFX-PheX-5_at 17.6691 A 0.724854
AFFX-PheX-M_at 2.45355 A 0.995983
AFFX-PheX-3_at 84.3628 A 0.354453
AFFX-ThrX-5_at 10.2229 A 0.891021
AFFX-ThrX-M_at 70.671 A 0.52976

Total number of rows: 22810

Table truncated, full table size 657 Kbytes.




Supplementary file Size Download File type/resource
GSM539478_At_PR_OZ2_14.CEL.gz 3.1 Mb (ftp)(http) CEL
GSM539478_At_PR_OZ2_14.CHP.gz 126.4 Kb (ftp)(http) CHP
GSM539478_At_PR_OZ2_14.EXP.gz 520 b (ftp)(http) EXP
Processed data included within Sample table
Processed data provided as supplementary file

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