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Sample GSM539488 Query DataSets for GSM539488
Status Public on Sep 12, 2010
Title At_PR_OZ2_38
Sample type RNA
 
Source name DR5-GUS
Organism Arabidopsis thaliana
Characteristics ecotype: Columbia
age: 5 days after germination
tissue: lower half of seedling root
growth media: Standard media for 5 days
periodic order: 38
Extracted molecule total RNA
Extraction protocol see Affymetrix standard protocols
Label biotin
Label protocol see Affymetrix standard protocols
 
Hybridization protocol see Affymetrix standard protocols
Scan protocol see Affymetrix standard protocols
Description Gene expression data the OZ2 (upper half) under standard conditions for 5 days
Data processing MAS 5.0
 
Submission date Apr 30, 2010
Last update date Aug 15, 2018
Contact name Miguel Angel Moreno-Risueno
E-mail(s) [email protected]
Phone 9196138203
Organization name Duke University
Department Biology
Lab Benfey
Street address 124 Science Dr
City Durham
State/province NC
ZIP/Postal code 27708
Country USA
 
Platform ID GPL198
Series (1)
GSE21611 Oscillating gene expression determines competence for periodic branching in the Arabidopsis root
Relations
Reanalyzed by GSE118579

Data table header descriptions
ID_REF
VALUE MAS 5.0 signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 784.928 P 0.000195116
AFFX-BioB-M_at 1172.11 P 7.00668e-05
AFFX-BioB-3_at 527.759 P 4.42873e-05
AFFX-BioC-5_at 1436.99 P 5.16732e-05
AFFX-BioC-3_at 1054.69 P 8.14279e-05
AFFX-BioDn-5_at 5924.74 P 4.42873e-05
AFFX-BioDn-3_at 8136.02 P 4.42873e-05
AFFX-CreX-5_at 28988.9 P 4.42873e-05
AFFX-CreX-3_at 32730.1 P 4.42873e-05
AFFX-DapX-5_at 138.449 P 0.000581214
AFFX-DapX-M_at 1441.16 P 8.14279e-05
AFFX-DapX-3_at 7792.02 P 4.42873e-05
AFFX-LysX-5_at 58.0786 M 0.0629293
AFFX-LysX-M_at 311.28 P 0.000856509
AFFX-LysX-3_at 1173.61 P 5.16732e-05
AFFX-PheX-5_at 78.9588 P 0.0151826
AFFX-PheX-M_at 362.153 P 0.00010954
AFFX-PheX-3_at 1613.98 P 5.16732e-05
AFFX-ThrX-5_at 57.1401 A 0.216524
AFFX-ThrX-M_at 190.598 P 5.16732e-05

Total number of rows: 22810

Table truncated, full table size 662 Kbytes.




Supplementary file Size Download File type/resource
GSM539488_At_PR_OZ2_38.CEL.gz 3.2 Mb (ftp)(http) CEL
GSM539488_At_PR_OZ2_38.CHP.gz 125.7 Kb (ftp)(http) CHP
GSM539488_At_PR_OZ2_38.EXP.gz 520 b (ftp)(http) EXP
Processed data included within Sample table
Processed data provided as supplementary file

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