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Sample GSM539482 Query DataSets for GSM539482
Status Public on Sep 12, 2010
Title At_PR_OZ2_21
Sample type RNA
 
Source name DR5-GUS
Organism Arabidopsis thaliana
Characteristics ecotype: Columbia
age: 5 days after germination
tissue: lower half of seedling root
growth media: Standard media for 5 days
periodic order: 36
Extracted molecule total RNA
Extraction protocol see Affymetrix standard protocols
Label biotin
Label protocol see Affymetrix standard protocols
 
Hybridization protocol see Affymetrix standard protocols
Scan protocol see Affymetrix standard protocols
Description Gene expression data the OZ2 (upper half) under standard conditions for 5 days
Data processing MAS 5.0
 
Submission date Apr 30, 2010
Last update date Aug 15, 2018
Contact name Miguel Angel Moreno-Risueno
E-mail(s) [email protected]
Phone 9196138203
Organization name Duke University
Department Biology
Lab Benfey
Street address 124 Science Dr
City Durham
State/province NC
ZIP/Postal code 27708
Country USA
 
Platform ID GPL198
Series (1)
GSE21611 Oscillating gene expression determines competence for periodic branching in the Arabidopsis root
Relations
Reanalyzed by GSE118579

Data table header descriptions
ID_REF
VALUE MAS 5.0 signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 700.477 P 7.00668e-05
AFFX-BioB-M_at 1043.86 P 6.02111e-05
AFFX-BioB-3_at 619.111 P 4.42873e-05
AFFX-BioC-5_at 2233.27 P 4.42873e-05
AFFX-BioC-3_at 2100.71 P 4.42873e-05
AFFX-BioDn-5_at 3995.11 P 4.42873e-05
AFFX-BioDn-3_at 5919.12 P 4.42873e-05
AFFX-CreX-5_at 18044.9 P 4.42873e-05
AFFX-CreX-3_at 24462.4 P 4.42873e-05
AFFX-DapX-5_at 29.4009 A 0.39692
AFFX-DapX-M_at 8.1811 A 0.783476
AFFX-DapX-3_at 8.71524 A 0.932322
AFFX-LysX-5_at 17.8918 A 0.794268
AFFX-LysX-M_at 4.42951 A 0.969024
AFFX-LysX-3_at 19.6285 A 0.440646
AFFX-PheX-5_at 7.89523 A 0.883887
AFFX-PheX-M_at 8.51003 A 0.932322
AFFX-PheX-3_at 12.1331 A 0.783476
AFFX-ThrX-5_at 15.0221 A 0.891021
AFFX-ThrX-M_at 41.0683 A 0.340661

Total number of rows: 22810

Table truncated, full table size 662 Kbytes.




Supplementary file Size Download File type/resource
GSM539482_At_PR_OZ2_21.CEL.gz 3.2 Mb (ftp)(http) CEL
GSM539482_At_PR_OZ2_21.CHP.gz 126.9 Kb (ftp)(http) CHP
GSM539482_At_PR_OZ2_21.EXP.gz 521 b (ftp)(http) EXP
Processed data included within Sample table
Processed data provided as supplementary file

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