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Sample GSM539461 Query DataSets for GSM539461
Status Public on Sep 12, 2010
Title At_PR_OZ1_15
Sample type RNA
 
Source name DR5-GUS
Organism Arabidopsis thaliana
Characteristics ecotype: Columbia
age: 5 days after germination
tissue: upper half of seedling root
growth media: Standard media for 5 days
periodic order: 9
Extracted molecule total RNA
Extraction protocol see Affymetrix standard protocols
Label biotin
Label protocol see Affymetrix standard protocols
 
Hybridization protocol see Affymetrix standard protocols
Scan protocol see Affymetrix standard protocols
Description Gene expression data the OZ1 (lower half) under standard conditions for 5 days
Data processing MAS 5.0
 
Submission date Apr 30, 2010
Last update date Sep 12, 2010
Contact name Miguel Angel Moreno-Risueno
E-mail(s) [email protected]
Phone 9196138203
Organization name Duke University
Department Biology
Lab Benfey
Street address 124 Science Dr
City Durham
State/province NC
ZIP/Postal code 27708
Country USA
 
Platform ID GPL198
Series (1)
GSE21611 Oscillating gene expression determines competence for periodic branching in the Arabidopsis root

Data table header descriptions
ID_REF
VALUE MAS 5.0 signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 3799.03 P 0.000126798
AFFX-BioB-M_at 5353.89 P 4.42873e-05
AFFX-BioB-3_at 3379.05 P 4.42873e-05
AFFX-BioC-5_at 10417.2 P 4.42873e-05
AFFX-BioC-3_at 9570.74 P 4.42873e-05
AFFX-BioDn-5_at 22080.9 P 4.42873e-05
AFFX-BioDn-3_at 30085.1 P 4.42873e-05
AFFX-CreX-5_at 85423.6 P 4.42873e-05
AFFX-CreX-3_at 111149 P 4.42873e-05
AFFX-DapX-5_at 55.6878 A 0.60308
AFFX-DapX-M_at 22.4752 A 0.941556
AFFX-DapX-3_at 17.0559 A 0.852061
AFFX-LysX-5_at 11.1441 A 0.852061
AFFX-LysX-M_at 64.2105 A 0.712257
AFFX-LysX-3_at 37.7348 A 0.58862
AFFX-PheX-5_at 37.2388 A 0.544591
AFFX-PheX-M_at 34.9261 A 0.760937
AFFX-PheX-3_at 102.815 A 0.544587
AFFX-ThrX-5_at 22.0372 A 0.772364
AFFX-ThrX-M_at 76.5817 A 0.300591

Total number of rows: 22810

Table truncated, full table size 653 Kbytes.




Supplementary file Size Download File type/resource
GSM539461_At_PR_OZ1_15.CEL.gz 3.1 Mb (ftp)(http) CEL
GSM539461_At_PR_OZ1_15.CHP.gz 124.6 Kb (ftp)(http) CHP
GSM539461_At_PR_OZ1_15.EXP.gz 519 b (ftp)(http) EXP
Processed data included within Sample table
Processed data provided as supplementary file

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