NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM539464 Query DataSets for GSM539464
Status Public on Sep 12, 2010
Title At_PR_OZ1_19
Sample type RNA
 
Source name DR5-GUS
Organism Arabidopsis thaliana
Characteristics ecotype: Columbia
age: 5 days after germination
tissue: upper half of seedling root
growth media: Standard media for 5 days
periodic order: 17
Extracted molecule total RNA
Extraction protocol see Affymetrix standard protocols
Label biotin
Label protocol see Affymetrix standard protocols
 
Hybridization protocol see Affymetrix standard protocols
Scan protocol see Affymetrix standard protocols
Description Gene expression data the OZ1 (lower half) under standard conditions for 5 days
Data processing MAS 5.0
 
Submission date Apr 30, 2010
Last update date Aug 15, 2018
Contact name Miguel Angel Moreno-Risueno
E-mail(s) [email protected]
Phone 9196138203
Organization name Duke University
Department Biology
Lab Benfey
Street address 124 Science Dr
City Durham
State/province NC
ZIP/Postal code 27708
Country USA
 
Platform ID GPL198
Series (1)
GSE21611 Oscillating gene expression determines competence for periodic branching in the Arabidopsis root
Relations
Reanalyzed by GSE118579

Data table header descriptions
ID_REF
VALUE MAS 5.0 signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 972.446 P 0.000445901
AFFX-BioB-M_at 1448.98 P 6.02111e-05
AFFX-BioB-3_at 633.439 P 0.000224668
AFFX-BioC-5_at 3279.61 P 4.42873e-05
AFFX-BioC-3_at 2296.67 P 4.42873e-05
AFFX-BioDn-5_at 5961.56 P 4.42873e-05
AFFX-BioDn-3_at 9046.53 P 4.42873e-05
AFFX-CreX-5_at 26643.8 P 4.42873e-05
AFFX-CreX-3_at 32223.6 P 4.42873e-05
AFFX-DapX-5_at 3.79595 A 0.883887
AFFX-DapX-M_at 79.1674 A 0.300606
AFFX-DapX-3_at 15.0606 A 0.824672
AFFX-LysX-5_at 40.0846 A 0.631562
AFFX-LysX-M_at 15.6553 A 0.699394
AFFX-LysX-3_at 34.035 A 0.48511
AFFX-PheX-5_at 5.04337 A 0.979978
AFFX-PheX-M_at 2.77001 A 0.876428
AFFX-PheX-3_at 36.0322 A 0.51489
AFFX-ThrX-5_at 22.0542 A 0.58862
AFFX-ThrX-M_at 51.336 A 0.440646

Total number of rows: 22810

Table truncated, full table size 656 Kbytes.




Supplementary file Size Download File type/resource
GSM539464_At_PR_OZ1_19.CEL.gz 3.2 Mb (ftp)(http) CEL
GSM539464_At_PR_OZ1_19.CHP.gz 124.3 Kb (ftp)(http) CHP
GSM539464_At_PR_OZ1_19.EXP.gz 519 b (ftp)(http) EXP
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap