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Sample GSM539485 Query DataSets for GSM539485
Status Public on Sep 12, 2010
Title At_PR_OZ2_32
Sample type RNA
 
Source name DR5-GUS
Organism Arabidopsis thaliana
Characteristics ecotype: Columbia
age: 5 days after germination
tissue: lower half of seedling root
growth media: Standard media for 5 days
periodic order: 28
Extracted molecule total RNA
Extraction protocol see Affymetrix standard protocols
Label biotin
Label protocol see Affymetrix standard protocols
 
Hybridization protocol see Affymetrix standard protocols
Scan protocol see Affymetrix standard protocols
Description Gene expression data the OZ2 (upper half) under standard conditions for 5 days
Data processing MAS 5.0
 
Submission date Apr 30, 2010
Last update date Sep 12, 2010
Contact name Miguel Angel Moreno-Risueno
E-mail(s) [email protected]
Phone 9196138203
Organization name Duke University
Department Biology
Lab Benfey
Street address 124 Science Dr
City Durham
State/province NC
ZIP/Postal code 27708
Country USA
 
Platform ID GPL198
Series (1)
GSE21611 Oscillating gene expression determines competence for periodic branching in the Arabidopsis root

Data table header descriptions
ID_REF
VALUE MAS 5.0 signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 9919.21 P 4.42873e-05
AFFX-BioB-M_at 15701.7 P 7.00668e-05
AFFX-BioB-3_at 10115.3 P 4.42873e-05
AFFX-BioC-5_at 14738.6 P 4.42873e-05
AFFX-BioC-3_at 11128.3 P 4.42873e-05
AFFX-BioDn-5_at 63035.1 P 4.42873e-05
AFFX-BioDn-3_at 101529 P 4.42873e-05
AFFX-CreX-5_at 232929 P 4.42873e-05
AFFX-CreX-3_at 345413 P 4.42873e-05
AFFX-DapX-5_at 442.49 P 0.0182806
AFFX-DapX-M_at 4278.4 P 0.000224668
AFFX-DapX-3_at 26887 P 4.42873e-05
AFFX-LysX-5_at 567.74 M 0.0629293
AFFX-LysX-M_at 1538.99 P 0.00762003
AFFX-LysX-3_at 5627.22 P 5.16732e-05
AFFX-PheX-5_at 330.086 A 0.659339
AFFX-PheX-M_at 714.14 P 0.0125468
AFFX-PheX-3_at 4331.06 P 5.16732e-05
AFFX-ThrX-5_at 27.2479 A 0.963431
AFFX-ThrX-M_at 894.499 P 0.000146581

Total number of rows: 22810

Table truncated, full table size 644 Kbytes.




Supplementary file Size Download File type/resource
GSM539485_At_PR_OZ2_32.CEL.gz 3.0 Mb (ftp)(http) CEL
GSM539485_At_PR_OZ2_32.CHP.gz 123.9 Kb (ftp)(http) CHP
GSM539485_At_PR_OZ2_32.EXP.gz 521 b (ftp)(http) EXP
Processed data included within Sample table
Processed data provided as supplementary file

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