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Sample GSM539477 Query DataSets for GSM539477
Status Public on Sep 12, 2010
Title At_PR_OZ2_13
Sample type RNA
 
Source name DR5-GUS
Organism Arabidopsis thaliana
Characteristics ecotype: Columbia
age: 5 days after germination
tissue: lower half of seedling root
growth media: Standard media for 5 days
periodic order: 25
Extracted molecule total RNA
Extraction protocol see Affymetrix standard protocols
Label biotin
Label protocol see Affymetrix standard protocols
 
Hybridization protocol see Affymetrix standard protocols
Scan protocol see Affymetrix standard protocols
Description Gene expression data the OZ2 (upper half) under standard conditions for 5 days
Data processing MAS 5.0
 
Submission date Apr 30, 2010
Last update date Sep 12, 2010
Contact name Miguel Angel Moreno-Risueno
E-mail(s) [email protected]
Phone 9196138203
Organization name Duke University
Department Biology
Lab Benfey
Street address 124 Science Dr
City Durham
State/province NC
ZIP/Postal code 27708
Country USA
 
Platform ID GPL198
Series (1)
GSE21611 Oscillating gene expression determines competence for periodic branching in the Arabidopsis root

Data table header descriptions
ID_REF
VALUE MAS 5.0 signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1679.35 P 0.00010954
AFFX-BioB-M_at 2935.98 P 4.42873e-05
AFFX-BioB-3_at 1413.23 P 4.42873e-05
AFFX-BioC-5_at 5256.88 P 4.42873e-05
AFFX-BioC-3_at 4849.54 P 4.42873e-05
AFFX-BioDn-5_at 10594.2 P 5.16732e-05
AFFX-BioDn-3_at 17475.6 P 4.42873e-05
AFFX-CreX-5_at 38734.7 P 4.42873e-05
AFFX-CreX-3_at 59087.8 P 4.42873e-05
AFFX-DapX-5_at 56.8873 A 0.852061
AFFX-DapX-M_at 69.8478 A 0.868639
AFFX-DapX-3_at 12.7623 A 0.834139
AFFX-LysX-5_at 8.51882 A 0.988616
AFFX-LysX-M_at 7.19656 A 0.998204
AFFX-LysX-3_at 13.8745 A 0.897835
AFFX-PheX-5_at 15.0443 A 0.910522
AFFX-PheX-M_at 6.00249 A 0.995002
AFFX-PheX-3_at 28.027 A 0.834139
AFFX-ThrX-5_at 12.2296 A 0.937071
AFFX-ThrX-M_at 51.3576 A 0.910541

Total number of rows: 22810

Table truncated, full table size 654 Kbytes.




Supplementary file Size Download File type/resource
GSM539477_At_PR_OZ2_13.CEL.gz 3.0 Mb (ftp)(http) CEL
GSM539477_At_PR_OZ2_13.CHP.gz 126.3 Kb (ftp)(http) CHP
GSM539477_At_PR_OZ2_13.EXP.gz 521 b (ftp)(http) EXP
Processed data included within Sample table
Processed data provided as supplementary file

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