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Sample GSM539465 Query DataSets for GSM539465
Status Public on Sep 12, 2010
Title At_PR_OZ1_20
Sample type RNA
 
Source name DR5-GUS
Organism Arabidopsis thaliana
Characteristics ecotype: Columbia
age: 5 days after germination
tissue: upper half of seedling root
growth media: Standard media for 5 days
periodic order: 20
Extracted molecule total RNA
Extraction protocol see Affymetrix standard protocols
Label biotin
Label protocol see Affymetrix standard protocols
 
Hybridization protocol see Affymetrix standard protocols
Scan protocol see Affymetrix standard protocols
Description Gene expression data the OZ1 (lower half) under standard conditions for 5 days
Data processing MAS 5.0
 
Submission date Apr 30, 2010
Last update date Aug 15, 2018
Contact name Miguel Angel Moreno-Risueno
E-mail(s) [email protected]
Phone 9196138203
Organization name Duke University
Department Biology
Lab Benfey
Street address 124 Science Dr
City Durham
State/province NC
ZIP/Postal code 27708
Country USA
 
Platform ID GPL198
Series (1)
GSE21611 Oscillating gene expression determines competence for periodic branching in the Arabidopsis root
Relations
Reanalyzed by GSE118579

Data table header descriptions
ID_REF
VALUE MAS 5.0 signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 456.718 P 0.000509415
AFFX-BioB-M_at 603.255 P 9.4506e-05
AFFX-BioB-3_at 318.331 P 4.42873e-05
AFFX-BioC-5_at 1720.82 P 5.16732e-05
AFFX-BioC-3_at 1110.19 P 4.42873e-05
AFFX-BioDn-5_at 2539.04 P 4.42873e-05
AFFX-BioDn-3_at 3945.86 P 4.42873e-05
AFFX-CreX-5_at 13399.2 P 4.42873e-05
AFFX-CreX-3_at 15156.2 P 4.42873e-05
AFFX-DapX-5_at 4.46566 A 0.712257
AFFX-DapX-M_at 25.0894 A 0.631562
AFFX-DapX-3_at 3.50182 A 0.993129
AFFX-LysX-5_at 23.0869 A 0.425962
AFFX-LysX-M_at 6.63013 A 0.834139
AFFX-LysX-3_at 32.377 A 0.175328
AFFX-PheX-5_at 1.63824 A 0.993129
AFFX-PheX-M_at 3.73086 A 0.957038
AFFX-PheX-3_at 14.9022 A 0.574038
AFFX-ThrX-5_at 4.16565 A 0.953518
AFFX-ThrX-M_at 31.412 A 0.686277

Total number of rows: 22810

Table truncated, full table size 662 Kbytes.




Supplementary file Size Download File type/resource
GSM539465_At_PR_OZ1_20.CEL.gz 3.4 Mb (ftp)(http) CEL
GSM539465_At_PR_OZ1_20.CHP.gz 125.5 Kb (ftp)(http) CHP
GSM539465_At_PR_OZ1_20.EXP.gz 518 b (ftp)(http) EXP
Processed data included within Sample table
Processed data provided as supplementary file

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