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Sample GSM539457 Query DataSets for GSM539457
Status Public on Sep 12, 2010
Title At_PR_OZ1_9
Sample type RNA
 
Source name DR5-GUS
Organism Arabidopsis thaliana
Characteristics ecotype: Columbia
age: 5 days after germination
tissue: upper half of seedling root
growth media: Standard media for 5 days
periodic order: 18
Extracted molecule total RNA
Extraction protocol see Affymetrix standard protocols
Label biotin
Label protocol see Affymetrix standard protocols
 
Hybridization protocol see Affymetrix standard protocols
Scan protocol see Affymetrix standard protocols
Description Gene expression data the OZ1 (lower half) under standard conditions for 5 days
Data processing MAS 5.0
 
Submission date Apr 30, 2010
Last update date Aug 15, 2018
Contact name Miguel Angel Moreno-Risueno
E-mail(s) [email protected]
Phone 9196138203
Organization name Duke University
Department Biology
Lab Benfey
Street address 124 Science Dr
City Durham
State/province NC
ZIP/Postal code 27708
Country USA
 
Platform ID GPL198
Series (1)
GSE21611 Oscillating gene expression determines competence for periodic branching in the Arabidopsis root
Relations
Reanalyzed by GSE118579

Data table header descriptions
ID_REF
VALUE MAS 5.0 signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 355.622 P 9.4506e-05
AFFX-BioB-M_at 519.537 P 7.00668e-05
AFFX-BioB-3_at 301.391 P 4.42873e-05
AFFX-BioC-5_at 540.005 P 6.02111e-05
AFFX-BioC-3_at 458.389 P 5.16732e-05
AFFX-BioDn-5_at 2711.93 P 4.42873e-05
AFFX-BioDn-3_at 3476.54 P 4.42873e-05
AFFX-CreX-5_at 12317.2 P 4.42873e-05
AFFX-CreX-3_at 15647 P 4.42873e-05
AFFX-DapX-5_at 90.3179 P 0.00179591
AFFX-DapX-M_at 572.213 P 9.4506e-05
AFFX-DapX-3_at 2681.69 P 4.42873e-05
AFFX-LysX-5_at 47.3333 A 0.083592
AFFX-LysX-M_at 280.988 P 0.00227496
AFFX-LysX-3_at 635.144 P 5.16732e-05
AFFX-PheX-5_at 63.0294 P 0.0044838
AFFX-PheX-M_at 129.631 P 0.00141043
AFFX-PheX-3_at 544.624 P 4.42873e-05
AFFX-ThrX-5_at 42.8938 A 0.0988574
AFFX-ThrX-M_at 161.497 P 0.000126798

Total number of rows: 22810

Table truncated, full table size 667 Kbytes.




Supplementary file Size Download File type/resource
GSM539457_At_PR_OZ1_9.CEL.gz 3.2 Mb (ftp)(http) CEL
GSM539457_At_PR_OZ1_9.CHP.gz 126.2 Kb (ftp)(http) CHP
GSM539457_At_PR_OZ1_9.EXP.gz 520 b (ftp)(http) EXP
Processed data included within Sample table
Processed data provided as supplementary file

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