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Sample GSM539471 Query DataSets for GSM539471
Status Public on Sep 12, 2010
Title At_PR_OZ1_35
Sample type RNA
 
Source name DR5-GUS
Organism Arabidopsis thaliana
Characteristics ecotype: Columbia
age: 5 days after germination
tissue: upper half of seedling root
growth media: Standard media for 5 days
periodic order: 16
Extracted molecule total RNA
Extraction protocol see Affymetrix standard protocols
Label biotin
Label protocol see Affymetrix standard protocols
 
Hybridization protocol see Affymetrix standard protocols
Scan protocol see Affymetrix standard protocols
Description Gene expression data the OZ1 (lower half) under standard conditions for 5 days
Data processing MAS 5.0
 
Submission date Apr 30, 2010
Last update date Sep 12, 2010
Contact name Miguel Angel Moreno-Risueno
E-mail(s) [email protected]
Phone 9196138203
Organization name Duke University
Department Biology
Lab Benfey
Street address 124 Science Dr
City Durham
State/province NC
ZIP/Postal code 27708
Country USA
 
Platform ID GPL198
Series (1)
GSE21611 Oscillating gene expression determines competence for periodic branching in the Arabidopsis root

Data table header descriptions
ID_REF
VALUE MAS 5.0 signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1449.28 P 0.000126798
AFFX-BioB-M_at 2065.11 P 7.00668e-05
AFFX-BioB-3_at 1082.16 P 4.42873e-05
AFFX-BioC-5_at 2384.55 P 5.16732e-05
AFFX-BioC-3_at 1591.95 P 5.16732e-05
AFFX-BioDn-5_at 8826.56 P 4.42873e-05
AFFX-BioDn-3_at 13794.4 P 4.42873e-05
AFFX-CreX-5_at 41137.1 P 4.42873e-05
AFFX-CreX-3_at 56678.3 P 4.42873e-05
AFFX-DapX-5_at 106.523 P 0.0464816
AFFX-DapX-M_at 1131 P 0.0012475
AFFX-DapX-3_at 10397.6 P 4.42873e-05
AFFX-LysX-5_at 23.6097 A 0.737173
AFFX-LysX-M_at 339.996 P 0.0166701
AFFX-LysX-3_at 1445.6 P 4.42873e-05
AFFX-PheX-5_at 55.9362 A 0.617401
AFFX-PheX-M_at 285.98 P 0.002867
AFFX-PheX-3_at 1917.57 P 0.00010954
AFFX-ThrX-5_at 54.9141 A 0.470241
AFFX-ThrX-M_at 159.49 P 0.0309764

Total number of rows: 22810

Table truncated, full table size 655 Kbytes.




Supplementary file Size Download File type/resource
GSM539471_At_PR_OZ1_35.CEL.gz 3.1 Mb (ftp)(http) CEL
GSM539471_At_PR_OZ1_35.CHP.gz 125.7 Kb (ftp)(http) CHP
GSM539471_At_PR_OZ1_35.EXP.gz 518 b (ftp)(http) EXP
Processed data included within Sample table
Processed data provided as supplementary file

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