NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL3896 Query DataSets for GPL3896
Status Public on Jun 27, 2006
Title Sentrix® Linkage IV Panel BeadChip
Technology type oligonucleotide beads
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Illumina Inc.
Manufacture protocol http://www.illumina.com/technology/platform/tech_plat_sentrixarray.ilmn
Support silicon
Coating other
 
Description Illumina's SNP-based Linkage IV Panel is a marker map for genetic disease studies. The panel contains over 6000 highly informative SNP markers distributed evenly across the human genome and delivering high information optimized for linkage mapping studies.
 
Web link http://www.illumina.com/products/snp/snp_linkage_analysis.ilmn
Contributor(s) Oosting J
Submission date Jun 21, 2006
Last update date Aug 30, 2006
Contact name Jan Oosting
Phone +31 71 5266619
Organization name Leiden University Medical Center
Department Pathology
Street address Albinusdreef 2
City Leiden
ZIP/Postal code 2333ZA
Country Netherlands
 
Samples (48) GSM117521, GSM117522, GSM117523, GSM117524, GSM117525, GSM117526 
Series (1)
GSE5347 High Resolution Copy Number Analysis of Paraffin Embedded Archival Tissue Using SNP BeadArrays

Data table header descriptions
ID Ilmn ID
OPA GS0005701-OPA,GS0005702-OPA,GS0005703-OPA,GS0005704-OPA
SPOT_ID refSNP accession ID
oligo1 allele specific sequence for A-allele
oligo2 allele specific sequence for B-allele
oligo3 common sequence for SNP
IllumiCode_name bead translation code
Illumicode_Seq common sequence on bead
Ilmn Strand
SNP 2 nucleotides of SNP [ACGT]/[ACGT]
CHR chromosome
Ploidy ploidy of chromosome
MapInfo physical position on chromosome

Data table
ID OPA SPOT_ID oligo1 oligo2 oligo3 IllumiCode_name Illumicode_Seq Ilmn Strand SNP CHR Ploidy MapInfo
rs1867749-119.1_T_F_8215 GS0005701-OPA rs1867749 ACTTCGTCAGTAACGGACGTCATGGCTGACACATGTTAGCATAC GAGTCGAGGTCATATCGTGTCATGGCTGACACATGTTAGCATAG AGAAGGGGAAGAATTTTATTTATCCTGCCAATCGAGCGCGATACATGTCTGCCTATAGTGAGTC 3 CTGCCAATCGAGCGCGATACAT TOP C/G 2 diploid 120109057
rs1397354-119.1_B_F_10389 GS0005701-OPA rs1397354 ACTTCGTCAGTAACGGACGGAACTTCTCATTTGTGGCTCACCTAT GAGTCGAGGTCATATCGTGGAACTTCTCATTTGTGGCTCACCTAC CTAGGAGCAAGAAAAGTTGTGTTGCGTTGCGACTACCGATACGTGTCTGCCTATAGTGAGTC 10 TGCGTTGCGACTACCGATACGT BOT T/C 2 diploid 215118936
rs2840531-119.1_T_R_484358 GS0005701-OPA rs2840531 ACTTCGTCAGTAACGGACACGATGATGTGAGTGTCCAGCCA GAGTCGAGGTCATATCGTACGATGATGTGAGTGTCCAGCCG AAATTCTCCAGCACAAAAGATATTACTCCGTATCGCACGCAAGACGTCTGCCTATAGTGAGTC 21 TACTCCGTATCGCACGCAAGAC TOP A/G 1 diploid 2155821
rs649593-116.3_T_F_917 GS0005701-OPA rs649593 ACTTCGTCAGTAACGGACGAGGCCTTTTCTGGGAGCTGCCA GAGTCGAGGTCATATCGTGAGGCCTTTTCTGGGAGCTGCCG CTCAAAGTGAATTTTGGCTGAGGATGACGACCGAATACCGTTGGTCTGCCTATAGTGAGTC 23 GGATGACGACCGAATACCGTTG TOP A/G 1 diploid 37635225
rs1517342-108.3_B_F_9287 GS0005701-OPA rs1517342 ACTTCGTCAGTAACGGACGAATATTCTCAAGGTGGGCAATGTAT GAGTCGAGGTCATATCGTGAATATTCTCAAGGTGGGCAATGTAC TTACACTCAAAGAAATAAATGCAACCGTGTATCCGCGCAAGTTCTAGTCTGCCTATAGTGAGTC 27 CCGTGTATCCGCGCAAGTTCTA BOT T/C 2 diploid 169218217
rs1517343-88.3_T_F_9288 GS0005701-OPA rs1517343 ACTTCGTCAGTAACGGACGCAGGCAGCAACCAAGTACCTGAA GAGTCGAGGTCATATCGTGCAGGCAGCAACCAAGTACCTGAC AAGAAAGTCAATCTCCTATAAAATGTGGTCTGACGCGACGAAGTAGAGTCTGCCTATAGTGAGTC 28 TGGTCTGACGCGACGAAGTAGA TOP A/C 2 diploid 169218519
rs1868071-119.1_B_F_6136 GS0005701-OPA rs1868071 ACTTCGTCAGTAACGGACGCATGACATTCTCACAGTGGAAACAT GAGTCGAGGTCATATCGTGCATGACATTCTCACAGTGGAAACAC GGATGCCTCTTAAAACTTCTACTATCGTAGAGCGCGGACAATTCGGTCTGCCTATAGTGAGTC 30 ATCGTAGAGCGCGGACAATTCG BOT T/C 2 diploid 30219358
rs761162-119.1_T_F_1039399 GS0005701-OPA rs761162 ACTTCGTCAGTAACGGACGTCATTTACCAATTCCCATTTTAGAAA GAGTCGAGGTCATATCGTGTCATTTACCAATTCCCATTTTAGAAC TTGCCTGGTTTATCTCATATTACTCTCGGTCGAACGATCAAACGGGTCTGCCTATAGTGAGTC 31 TCTCGGTCGAACGATCAAACGG TOP A/C 1 diploid 13733834
rs911903-121.1_B_F_1039400 GS0005701-OPA rs911903 ACTTCGTCAGTAACGGACGTGGAGTTTTCCTCTCCAGCTCAAT GAGTCGAGGTCATATCGTGTGGAGTTTTCCTCTCCAGCTCAAC GCTATTTCAAGTGTGTTTTATATTTCCGCAGTCAACGACGTATTCCGAGTCTGCCTATAGTGAGTC 33 CGCAGTCAACGACGTATTCCGA BOT T/C 1 diploid 46982589
rs753646-119.1_B_F_1039401 GS0005701-OPA rs753646 ACTTCGTCAGTAACGGACGCTCTGCCATGCCCAATAGCTAGT GAGTCGAGGTCATATCGTGCTCTGCCATGCCCAATAGCTAGC GGCTTTCTCCAGCTCTCCTTGGAATCGCACGCGAATGGTAGGTCTGCCTATAGTGAGTC 36 TGGAATCGCACGCGAATGGTAG BOT T/C 1 diploid 208765509
rs2477703-119.1_B_F_484359 GS0005701-OPA rs2477703 ACTTCGTCAGTAACGGACGGGTGGGAAAAAAGGATTCAGAACTTAAT GAGTCGAGGTCATATCGTGGGTGGGAAAAAAGGATTCAGAACTTAAC AGTTTAAAACAACACATGAGAGACCCGCTAAGTTGCGCGACACTCAGTCTGCCTATAGTGAGTC 38 CCGCTAAGTTGCGCGACACTCA BOT T/C 1 diploid 2295405
rs558912-108.3_B_F_1039402 GS0005701-OPA rs558912 ACTTCGTCAGTAACGGACCTTGCTCCAGATCCCATGTGTCT GAGTCGAGGTCATATCGTCTTGCTCCAGATCCCATGTGTCC CTTACTCATTCGTTATCCCATCTGCTAAGCCGGTACGCAGACGTTGTCTGCCTATAGTGAGTC 40 GCTAAGCCGGTACGCAGACGTT BOT T/C 2 diploid 16975766
rs357116-87_B_R_63382 GS0005701-OPA rs357116 ACTTCGTCAGTAACGGACGTGCAGAGCAAGGTGATTTATGCCT GAGTCGAGGTCATATCGTGTGCAGAGCAAGGTGATTTATGCCC AGGAACATGGGATAACCAATCCATAGCGGGATCGTAAGCGTGAGTCTGCCTATAGTGAGTC 41 CATAGCGGGATCGTAAGCGTGA BOT T/C 3 diploid 13296852
rs734999-119.1_B_F_484360 GS0005701-OPA rs734999 ACTTCGTCAGTAACGGACAATACCCGTGGGAAAGAAAAGCAT GAGTCGAGGTCATATCGTAATACCCGTGGGAAAGAAAAGCAC ACAGAGAACAGGAGACTTATGTGGGCACTTCGCACGGGTTACGAAGTCTGCCTATAGTGAGTC 42 GGCACTTCGCACGGGTTACGAA BOT T/C 1 diploid 2382629
rs2377041-116_B_R_484361 GS0005701-OPA rs2377041 ACTTCGTCAGTAACGGACGCCCCTCCTTCCTCAGAAGCTCAT GAGTCGAGGTCATATCGTGCCCCTCCTTCCTCAGAAGCTCAC ATTCGGTGTGACTTTGTTGATATGAGTGCCGTCGAAGTACGAGGTCTGCCTATAGTGAGTC 50 ATGAGTGCCGTCGAAGTACGAG BOT T/C 1 diploid 2496311
rs715494-119.1_B_R_1039403 GS0005701-OPA rs715494 ACTTCGTCAGTAACGGACCCTCTTAGAAACTGTCATGAGGAGCAT GAGTCGAGGTCATATCGTCCTCTTAGAAACTGTCATGAGGAGCAG TTCAGTAGGTCTCAAAGAGTCAGTGTGATAACGGTCGCTACACGGGTCTGCCTATAGTGAGTC 54 TGTGATAACGGTCGCTACACGG BOT T/G 22 diploid 28106987
rs223201-108.3_T_F_1039404 GS0005701-OPA rs223201 ACTTCGTCAGTAACGGACGCCCACTTGCCCCTTCATTACACA GAGTCGAGGTCATATCGTGCCCACTTGCCCCTTCATTACACG CCATGGTTTAGAATCACTTCTTTATGTTGACCGAACCGCATACGGGTCTGCCTATAGTGAGTC 56 ATGTTGACCGAACCGCATACGG TOP A/G 1 diploid 18055067
rs213006-102.3_T_F_1039405 GS0005701-OPA rs213006 ACTTCGTCAGTAACGGACGTCCCTCTTCCCAAAATGGACATAA GAGTCGAGGTCATATCGTGTCCCTCTTCCCAAAATGGACATAC TCTGTCAATTCAGCTAAATACAGAGCAGTTCGTCGGCGACATGATCGTCTGCCTATAGTGAGTC 61 GCAGTTCGTCGGCGACATGATC TOP A/C 1 diploid 21148075
rs520354-119.1_T_F_1039406 GS0005701-OPA rs520354 ACTTCGTCAGTAACGGACGACAAGGAGTCCTTGTGCAGAAA GAGTCGAGGTCATATCGTGACAAGGAGTCCTTGTGCAGAAG GAACAGAAGGTGGTTTTGCTAGACGCGATTGCCGGTAGAGTCGTCTGCCTATAGTGAGTC 62 AGACGCGATTGCCGGTAGAGTC TOP A/G 2 diploid 21234148
rs874515-86.2_T_R_1039407 GS0005701-OPA rs874515 ACTTCGTCAGTAACGGACGAACCATATTGCTCCATTCCCCAC GAGTCGAGGTCATATCGTGAACCATATTGCTCCATTCCCCAG CCACATACACCCTGACTCTCTGAGTGGCGTACTCCGTAGCGTAGTCTGCCTATAGTGAGTC 63 GAGTGGCGTACTCCGTAGCGTA TOP C/G 1 diploid 23348434

Total number of rows: 5858

Table truncated, full table size 1481 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap