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Sample GSM117864 Query DataSets for GSM117864
Status Public on Sep 01, 2006
Title T_F_106_201
Sample type genomic
 
Source name Fresh frozen Tumor DNA from patient 106
Organism Homo sapiens
Characteristics Colorectal cancer
Low intensity replicate
Extracted molecule genomic DNA
Extraction protocol DNA isolation was performed by salting out precipitation.
Label Cy3/Cy5
Label protocol DNA was prepared according to the standard Illumina protocol from 4 x 250 ng of DNA
 
Description Genotype and allele specfic intensity of leukocyte DNA
Data processing GenCall 6.0.0.7
 
Submission date Jun 30, 2006
Last update date Aug 17, 2006
Contact name Jan Oosting
Phone +31 71 5266619
Organization name Leiden University Medical Center
Department Pathology
Street address Albinusdreef 2
City Leiden
ZIP/Postal code 2333ZA
Country Netherlands
 
Platform ID GPL3896
Series (1)
GSE5347 High Resolution Copy Number Analysis of Paraffin Embedded Archival Tissue Using SNP BeadArrays

Data table header descriptions
ID_REF
VALUE Gencall score, sample specific quality score for genotype
GENOTYPE Genotype A,B,H
GTS Gentrain score, experiment wide quality score for genotype
GREEN Green/Cy3 Intensity
RED Red/Cy5 Intensity

Data table
ID_REF VALUE GENOTYPE GTS GREEN RED
rs884080-116.3_B_R_62439 0.7280654 H 0.7736175 556 469
rs2017143-119.1_T_R_20 0.7360214 A 0.7820713 367 135
rs2840531-119.1_T_R_484358 0.7440428 B 0.8322048 310 950
rs2477703-119.1_B_F_484359 0.4829671 A 0.5131844 526 170
rs734999-119.1_B_F_484360 0.4923573 H 0.523353 388 287
rs2377041-116_B_R_484361 0.592515 H 0.6627223 477 444
rs2606418-119.1_B_R_484363 0.8310663 A 0.8830628 605 150
rs2027262-111_B_F_484364 0.8255264 A 0.8771762 564 157
rs2981881-116.3_T_F_484365 0.6770438 H 0.7194037 384 316
rs7534363-116.2_B_F_484367 0.3965654 A 0.601967 1172 208
rs2065525-119.1_B_R_484368 0.4946435 H 0.5255914 625 402
rs2821039-119.1_T_R_484369 0.5081333 H 0.5399252 377 255
rs878063-119.1_T_R_484370 0.4680395 H 0.4973229 364 286
rs1870509-119.1_T_R_1039909 0.3791066 H 0.4347475 293 208
rs2035453-94.3_T_R_1039639 0.3940091 H 0.4186607 581 394
rs557477-119.1_B_F_1040102 0.4467358 A 0.5076731 392 156
rs912991-119.1_T_F_1039773 0.6515134 A 0.6951661 701 157
rs1570964-119.1_B_F_1039413 0.4895614 A 0.5242264 327 143
rs729206-119.1_B_R_1039926 0.6427668 A 0.7191561 433 153
rs531099-119.1_T_R_114 0.5890223 H 0.6258751 497 291

Total number of rows: 5858

Table truncated, full table size 324 Kbytes.




Supplementary data files not provided
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