NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM117533 Query DataSets for GSM117533
Status Public on Sep 01, 2006
Title T_F_514_260
Sample type genomic
 
Source name Fresh frozen Tumor DNA from patient 514
Organism Homo sapiens
Characteristics Colorectal cancer
Extracted molecule genomic DNA
Extraction protocol DNA isolation was performed by salting out precipitation.
Label Cy3/Cy5
Label protocol DNA was prepared according to the standard Illumina protocol from 4 x 250 ng of DNA
 
Description Genotype and allele specfic intensity of leukocyte DNA
Data processing GenCall 6.0.0.7
 
Submission date Jun 30, 2006
Last update date Aug 17, 2006
Contact name Jan Oosting
Phone +31 71 5266619
Organization name Leiden University Medical Center
Department Pathology
Street address Albinusdreef 2
City Leiden
ZIP/Postal code 2333ZA
Country Netherlands
 
Platform ID GPL3896
Series (1)
GSE5347 High Resolution Copy Number Analysis of Paraffin Embedded Archival Tissue Using SNP BeadArrays

Data table header descriptions
ID_REF
VALUE Gencall score, sample specific quality score for genotype
GENOTYPE Genotype A,B,H
GTS Gentrain score, experiment wide quality score for genotype
GREEN Green/Cy3 Intensity
RED Red/Cy5 Intensity

Data table
ID_REF VALUE GENOTYPE GTS GREEN RED
rs884080-116.3_B_R_62439 0.6789041 H 0.7251126 4650 7584
rs2017143-119.1_T_R_20 0.550716 H 0.5881996 2195 5749
rs2840531-119.1_T_R_484358 0.4093531 B 0.624593 678 20493
rs2477703-119.1_B_F_484359 0.6551886 A 0.7376912 13105 1196
rs734999-119.1_B_F_484360 0.5327329 B 0.56937 842 7043
rs2377041-116_B_R_484361 0.363976 A 0.3887495 14435 2124
rs2606418-119.1_B_R_484363 0.7204621 A 0.7694991 12796 1052
rs2027262-111_B_F_484364 0.8032421 A 0.8579134 13555 819
rs2981881-116.3_T_F_484365 0.536279 H 0.5727799 4166 7596
rs7534363-116.2_B_F_484367 0.3703288 A 0.5650495 20517 1536
rs2065525-119.1_B_R_484368 0.5015117 A 0.535647 16042 1069
rs2821039-119.1_T_R_484369 0.6215629 B 0.6991151 721 13519
rs878063-119.1_T_R_484370 0.3658462 A 0.4047459 4959 1417
rs1870509-119.1_T_R_1039909 0.4108759 H 0.4388416 799 4254
rs2035453-94.3_T_R_1039639 0.7213805 B 0.7704801 2131 7643
rs557477-119.1_B_F_1040102 0.79022 A 0.844009 3251 330
rs912991-119.1_T_F_1039773 0.5562791 H 0.5941417 6501 3179
rs1570964-119.1_B_F_1039413 0.5171064 H 0.5632477 1311 1242
rs729206-119.1_B_R_1039926 0.4399517 H 0.4698966 4707 3128
rs531099-119.1_T_R_114 0.5621473 A 0.6004133 10203 1208

Total number of rows: 5858

Table truncated, full table size 331 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap